Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
21132161
nucleus: 28499913 |
msms PMID:
21132161
doi
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G23080.1 | KRH00416 | AT1G55520.1 | 16024589 |
| AT5G23080.1 | KRH08285 | AT1G55520.1 | 16024589 |
| AT5G23080.1 | KRH40768 | AT1G55520.1 | 16024589 |
| AT5G23080.1 | KRH65451 | AT1G55520.1 | 16024589 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH03843 | Soybean | nucleus | 86.09 | 86.95 |
| VIT_17s0000g04440.t01 | Wine grape | nucleus | 55.82 | 56.77 |
| CDY02204 | Canola | nucleus | 52.17 | 56.22 |
| AT5G23080.1 | Thale cress | nucleus | 51.48 | 56.13 |
| CDY67704 | Canola | nucleus | 52.27 | 56.08 |
| CDY16838 | Canola | nucleus | 52.17 | 55.68 |
| Bra035958.1-P | Field mustard | nucleus | 52.07 | 55.58 |
| CDX87186 | Canola | nucleus | 51.87 | 55.54 |
| Bra013015.1-P | Field mustard | nucleus | 42.5 | 53.74 |
| Solyc03g114410.2.1 | Tomato | nucleus | 51.48 | 53.05 |
| TraesCS7A01G231500.1 | Wheat | nucleus | 44.38 | 45.41 |
| TraesCS7B01G129900.1 | Wheat | nucleus | 44.18 | 45.21 |
| TraesCS7D01G231700.1 | Wheat | nucleus | 44.18 | 45.21 |
| Os06t0489200-01 | Rice | nucleus | 43.2 | 44.51 |
| Zm00001d045954_P004 | Maize | nucleus | 42.41 | 43.48 |
| GSMUA_Achr8P03600_001 | Banana | nucleus | 47.24 | 43.27 |
| KXG19969 | Sorghum | nucleus | 42.11 | 42.96 |
| HORVU7Hr1G047420.9 | Barley | mitochondrion | 34.52 | 34.21 |
Protein Annotations
| Gene3D:1.10.10.790 | EntrezGene:100796934 | MapMan:16.10.2.1.4 | EMBL:ACUP02002797 | InterPro:DUF1604 | EnsemblPlantsGene:GLYMA_05G015200 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006396 |
| GO:GO:0006397 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | UniProt:I1K185 | InterPro:IPR000061 |
| InterPro:IPR035967 | EnsemblPlants:KRH56717 | ProteinID:KRH56717 | ProteinID:KRH56717.1 | PFAM:PF01805 | PFAM:PF07713 |
| PFscan:PS50128 | PANTHER:PTHR13384 | PANTHER:PTHR13384:SF19 | SMART:SM00648 | SUPFAM:SSF109905 | InterPro:SWAP/Surp_sf |
| InterPro:Surp | UniParc:UPI000233A5A6 | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr5:+:1386665..1398517
Molecular Weight (calculated)
114818.0 Da
IEP (calculated)
6.683
GRAVY (calculated)
-1.060
Length
1014 amino acids
Sequence
(BLAST)
(BLAST)
0001: MESDEDDFVF YGTPIEREDD SISRKKKAIA ESSGQLRTLP AWKQEVRDEE GRRRFHGAFT GGYSAGYYNT VGSKEGWAPQ SFKSSRKNRA EFKEQNILNF
0101: LDEDEKTELE GRFLGTTSQF DTFGFTAAEI ARKQAEKEQK QRPSIIPGPA PDEIVVPATE SVGVKLLLKM GWSHGRSIKD SHSEALYDAR RQARRAFLAF
0201: SSDDPKVKIT ETEPIEGDTE NFPEEPVNDD VWFSKSTPVY VLNPKQDLHG LGFDPYKHAP EFREKKRSRL ASKGGPGFST RDGLFGLKSG KAAPGFGIGA
0301: LEELDAEDED VYATGYEFED AYVQEVEEPL TLRLENQRKE VEEPSTLRLE SHRKKEQKDQ GDLPGFRVAS NSDYKMERFE APLIPKDFVP HHEFSGPLDI
0401: NRKSYEVNPP DVPPPEDGNL KLLIEGVANL VAKCGKLYED LSREKNQSNP LFNFLSGGTG HEYYARKLWE AQQKHNNQTS RQLDRKMPPS VQRLTAESRG
0501: QILGEKPLEK SSQDLSSSVA STDIHLQFNL TDTFIESASL SELMNVEKPF KDDPAKQERF EQFLKEKYKG GLRSASSSLA GDMSEVARAQ ERLSFEAAAE
0601: AIEKGRQVRG SKPLIPSSVD FIPGGVMQFT SGEVKPKKDL QAEDILKKKM YPKREEFQWR PSPLLCKRFD LIDPYMGKPP PAPRIRSKMD TLIFTSDSVK
0701: GAKVDEPVTS KKDISPLQLS TNKDITISIT ENEMEGDVEV ENIERPVDLY KAIFSDDSDD EGPSNRRVEN QEKKAEVANT ALSRLIAGDF LESLGKELGI
0801: EVPPDMPYAM QKSRNVAPQK DIFNEDARTD ILKSENNGVM SLNHDLPNDQ QHIAHEGGPS KGDDTIDGNM LESSINKTKG TSSQDNDSCS EERSKKQSNR
0901: EKYNEYRKDK TPVTHGWDYS SSSKLEEERS RKCSRHHRHK KRHAGSHSSS DDDRRDRHSS RSKGRRKGSS QEKSRSEKHS KHHKHRKHES PNRSSRYSKE
1001: KDNSHSRKEK RRGE
0101: LDEDEKTELE GRFLGTTSQF DTFGFTAAEI ARKQAEKEQK QRPSIIPGPA PDEIVVPATE SVGVKLLLKM GWSHGRSIKD SHSEALYDAR RQARRAFLAF
0201: SSDDPKVKIT ETEPIEGDTE NFPEEPVNDD VWFSKSTPVY VLNPKQDLHG LGFDPYKHAP EFREKKRSRL ASKGGPGFST RDGLFGLKSG KAAPGFGIGA
0301: LEELDAEDED VYATGYEFED AYVQEVEEPL TLRLENQRKE VEEPSTLRLE SHRKKEQKDQ GDLPGFRVAS NSDYKMERFE APLIPKDFVP HHEFSGPLDI
0401: NRKSYEVNPP DVPPPEDGNL KLLIEGVANL VAKCGKLYED LSREKNQSNP LFNFLSGGTG HEYYARKLWE AQQKHNNQTS RQLDRKMPPS VQRLTAESRG
0501: QILGEKPLEK SSQDLSSSVA STDIHLQFNL TDTFIESASL SELMNVEKPF KDDPAKQERF EQFLKEKYKG GLRSASSSLA GDMSEVARAQ ERLSFEAAAE
0601: AIEKGRQVRG SKPLIPSSVD FIPGGVMQFT SGEVKPKKDL QAEDILKKKM YPKREEFQWR PSPLLCKRFD LIDPYMGKPP PAPRIRSKMD TLIFTSDSVK
0701: GAKVDEPVTS KKDISPLQLS TNKDITISIT ENEMEGDVEV ENIERPVDLY KAIFSDDSDD EGPSNRRVEN QEKKAEVANT ALSRLIAGDF LESLGKELGI
0801: EVPPDMPYAM QKSRNVAPQK DIFNEDARTD ILKSENNGVM SLNHDLPNDQ QHIAHEGGPS KGDDTIDGNM LESSINKTKG TSSQDNDSCS EERSKKQSNR
0901: EKYNEYRKDK TPVTHGWDYS SSSKLEEERS RKCSRHHRHK KRHAGSHSSS DDDRRDRHSS RSKGRRKGSS QEKSRSEKHS KHHKHRKHES PNRSSRYSKE
1001: KDNSHSRKEK RRGE
001: MGSDEEDFVF HGTPIEREEE IASRKKKAVA GASGNLRTLP AWKQEVTDEE GRRRFHGAFT GGYSAGYYNT VGSKEGWAPQ SFTSSRQNRA GARKQSISDF
101: LDEDEKADME GKSLSASSQF DTFGFTAAEH SRKHAEKEQH ERPSAIPGPV PDELVAPVSE SIGVKLLLKM GWRRGHSIKE VRASSDARRE ARKAFLAFYT
201: DENTKETPDS LVSETEVETS LGEDIKISES TPVYVLNPKQ DLHGLGYDPF KHAPEFREKK RSRMSANKEV GFRKPLSMKE SLFGPKSGKI APGFGIGALE
301: ELDVEDEDVY AGYDFDQTYV IEDEQPARQS NDNRLRLTSK EHDVLPGFGA AKNSDYSMER FNPPIIPKDF VARHKFSGPL EAETKPTVSA PPEVPPPADN
401: NLKLLIEGFA TFVSRCGKLY EDLSREKNQS NQLFDFLREG NGHDYYARRL WEEQQKRKDQ SKLTLDVKVS PTVQKMTAET RGSLLGEKPL QRSLKETDTS
501: ASSGGSFQFP TNLSDTFTKS ASSQEAADAV KPFKDDPAKQ ERFEQFLKEK YKGGLRTTDS NRVNSMSESA RAQERLDFEA AAEAIEKGKA YKEVRRATEQ
601: PLDFLAGGLQ FTSGGTEQIK DTGVVDMKSS KTYPKREEFQ WRPSPLLCKR FDLPDPFMGK LPPAPRARNK MDSLVFLPDT VKAASARQVS ESQVPKKETS
701: IEEPEVEVEV ENVERPVDLY KAIFSDDSED DEDQPMNGKI QEGQEKKNEA AATTLNRLIA GDFLESLGKE LGFEVPMEEE IKSRSKPEDS SDKRLDRPGL
801: KEKVEEKTSS LTLGSEEEKS RKKREKSPGK RSGGNDLSSS ESSGDERRRK RYNKKDRHRN DSESDSSSDY HSRDKQGSRS RSKRRESSRE KRSSHKKHSK
901: HRRTKKSSSS RYSSDEEQKE SRREKKRRRD
101: LDEDEKADME GKSLSASSQF DTFGFTAAEH SRKHAEKEQH ERPSAIPGPV PDELVAPVSE SIGVKLLLKM GWRRGHSIKE VRASSDARRE ARKAFLAFYT
201: DENTKETPDS LVSETEVETS LGEDIKISES TPVYVLNPKQ DLHGLGYDPF KHAPEFREKK RSRMSANKEV GFRKPLSMKE SLFGPKSGKI APGFGIGALE
301: ELDVEDEDVY AGYDFDQTYV IEDEQPARQS NDNRLRLTSK EHDVLPGFGA AKNSDYSMER FNPPIIPKDF VARHKFSGPL EAETKPTVSA PPEVPPPADN
401: NLKLLIEGFA TFVSRCGKLY EDLSREKNQS NQLFDFLREG NGHDYYARRL WEEQQKRKDQ SKLTLDVKVS PTVQKMTAET RGSLLGEKPL QRSLKETDTS
501: ASSGGSFQFP TNLSDTFTKS ASSQEAADAV KPFKDDPAKQ ERFEQFLKEK YKGGLRTTDS NRVNSMSESA RAQERLDFEA AAEAIEKGKA YKEVRRATEQ
601: PLDFLAGGLQ FTSGGTEQIK DTGVVDMKSS KTYPKREEFQ WRPSPLLCKR FDLPDPFMGK LPPAPRARNK MDSLVFLPDT VKAASARQVS ESQVPKKETS
701: IEEPEVEVEV ENVERPVDLY KAIFSDDSED DEDQPMNGKI QEGQEKKNEA AATTLNRLIA GDFLESLGKE LGFEVPMEEE IKSRSKPEDS SDKRLDRPGL
801: KEKVEEKTSS LTLGSEEEKS RKKREKSPGK RSGGNDLSSS ESSGDERRRK RYNKKDRHRN DSESDSSSDY HSRDKQGSRS RSKRRESSRE KRSSHKKHSK
901: HRRTKKSSSS RYSSDEEQKE SRREKKRRRD
Arabidopsis Description
TGHG patch domain-containing protein TGH [Source:UniProtKB/Swiss-Prot;Acc:Q8GXN9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.