Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G23080.1 | CDY02435 | AT1G55520.1 | 16024589 |
| AT5G23080.1 | CDY08246 | AT1G55520.1 | 16024589 |
| AT5G23080.1 | CDY10555 | AT1G55520.1 | 16024589 |
| AT5G23080.1 | CDY26099 | AT1G55520.1 | 16024589 |
| AT5G23080.1 | CDY56078 | AT1G55520.1 | 16024589 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY67704 | Canola | nucleus | 97.24 | 96.83 |
| Bra013015.1-P | Field mustard | nucleus | 82.36 | 96.63 |
| CDY16838 | Canola | nucleus | 87.89 | 87.05 |
| CDX87186 | Canola | nucleus | 86.5 | 85.96 |
| AT5G23080.1 | Thale cress | nucleus | 81.51 | 82.47 |
| VIT_17s0000g04440.t01 | Wine grape | nucleus | 57.28 | 54.06 |
| KRH03843 | Soybean | nucleus | 57.17 | 53.59 |
| KRH56717 | Soybean | nucleus | 56.22 | 52.17 |
| Solyc03g114410.2.1 | Tomato | nucleus | 52.82 | 50.51 |
| TraesCS7A01G231500.1 | Wheat | nucleus | 46.23 | 43.9 |
| TraesCS7B01G129900.1 | Wheat | nucleus | 45.91 | 43.59 |
| TraesCS7D01G231700.1 | Wheat | nucleus | 45.8 | 43.49 |
| KXG19969 | Sorghum | nucleus | 45.48 | 43.06 |
| Zm00001d045954_P004 | Maize | nucleus | 45.06 | 42.87 |
| Os06t0489200-01 | Rice | nucleus | 44.63 | 42.68 |
| GSMUA_Achr8P03600_001 | Banana | nucleus | 48.14 | 40.92 |
| HORVU7Hr1G047420.9 | Barley | mitochondrion | 35.81 | 32.94 |
Protein Annotations
| Gene3D:1.10.10.790 | MapMan:16.10.2.1.4 | GO:A0A078ENC4 | EnsemblPlants:CDY02204 | ProteinID:CDY02204 | ProteinID:CDY02204.1 |
| InterPro:DUF1604 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0006139 |
| GO:GO:0006396 | GO:GO:0006397 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00113618001 |
| InterPro:IPR000061 | InterPro:IPR035967 | PFAM:PF01805 | PFAM:PF07713 | PFscan:PS50128 | PANTHER:PTHR13384 |
| PANTHER:PTHR13384:SF19 | SMART:SM00648 | SUPFAM:SSF109905 | InterPro:SWAP/Surp_sf | InterPro:Surp | UniParc:UPI0004EEA7FA |
| SEG:seg | : | : | : | : | : |
Description
BnaA03g39630D
Coordinates
chrLK031932:-:684905..690318
Molecular Weight (calculated)
105756.0 Da
IEP (calculated)
6.897
GRAVY (calculated)
-1.106
Length
941 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLDEDDFVF HGTPIEREDE IASRKKKAVA GASGTLKTLP AWKQEVTDEE GRRRFHGAFT GGYSAGYYNT VGSKEGWAPQ SFTSSRKNRA GARQQSISDF
101: LDEDEKAEME GQSLAASSQF DTFGFTAAEH SRKQAEKEQH ERPSAIPGPV HDELIAPAPE SIGVKLLLKM GWRRGHSIKD VRASSDARRE ARKAFLAFSA
201: DENTKESSDS LVLETEAETS LGPQFSEDIK FSETTPVYVL NPKLDLHGLG YDPFKHAPEF RENKRSRLSA SKEAGYRKPL SMKESLFGPK SGKMAPGFGI
301: GALEELDVED EDVYAGYDFD QTYVIEDEQP ARPSNDNRLR LTSKEHNVLP GFGAASNSDY SVERFDPPKI PKDFVARHKF SGPRETETKP TASTPPDVPP
401: PEDKNLKLLI DGFATFVSRC GKLYEDLSRE KNESNQLFDF LRGGSGHDYY ARRLWEEQQK RSGQSNLQLD VKVPPSVQKM TAETRGSLLG ERPLQKSLKE
501: TETSSSSGGS FQFPTNLSDT FTKSASSQEA ADAIKPFKED LAKQERFEQF LKEKYKGGLR SSDSNRFNIV SESARAQERL DFEAAAEAIE KGKAYKEVRR
601: ATERPIDFLA GGLQFTSGGT EQIKDTGVVD MKTSKTYPKR EEFQWRPAPL LCKRFDLPDP FMGKPAAAPR ARNKMDSLLF LPDTVKAASG SGARQVSDLQ
701: EPEKEPEVEV EVENVERPVD LYKAIFSDDS EDDEEQQPMN GKIQDGQEKK NEAAATTLNR LIAGDFLESL GKELGFEVPS DAPYPEGTKP MEAENKAKGK
801: PDASSERRPG LKEKPEEKTS SLKPVSEEEK STQKREKSPR NWSGGNDLYS SESSGDERRR KRSKKDRHRN YDSESDSSSD YHKRDKHSSR SRRKQRESSR
901: EKRSGHKKHS KHYKTKDSSS SRYSGDEERK ESKREKRRRR D
101: LDEDEKAEME GQSLAASSQF DTFGFTAAEH SRKQAEKEQH ERPSAIPGPV HDELIAPAPE SIGVKLLLKM GWRRGHSIKD VRASSDARRE ARKAFLAFSA
201: DENTKESSDS LVLETEAETS LGPQFSEDIK FSETTPVYVL NPKLDLHGLG YDPFKHAPEF RENKRSRLSA SKEAGYRKPL SMKESLFGPK SGKMAPGFGI
301: GALEELDVED EDVYAGYDFD QTYVIEDEQP ARPSNDNRLR LTSKEHNVLP GFGAASNSDY SVERFDPPKI PKDFVARHKF SGPRETETKP TASTPPDVPP
401: PEDKNLKLLI DGFATFVSRC GKLYEDLSRE KNESNQLFDF LRGGSGHDYY ARRLWEEQQK RSGQSNLQLD VKVPPSVQKM TAETRGSLLG ERPLQKSLKE
501: TETSSSSGGS FQFPTNLSDT FTKSASSQEA ADAIKPFKED LAKQERFEQF LKEKYKGGLR SSDSNRFNIV SESARAQERL DFEAAAEAIE KGKAYKEVRR
601: ATERPIDFLA GGLQFTSGGT EQIKDTGVVD MKTSKTYPKR EEFQWRPAPL LCKRFDLPDP FMGKPAAAPR ARNKMDSLLF LPDTVKAASG SGARQVSDLQ
701: EPEKEPEVEV EVENVERPVD LYKAIFSDDS EDDEEQQPMN GKIQDGQEKK NEAAATTLNR LIAGDFLESL GKELGFEVPS DAPYPEGTKP MEAENKAKGK
801: PDASSERRPG LKEKPEEKTS SLKPVSEEEK STQKREKSPR NWSGGNDLYS SESSGDERRR KRSKKDRHRN YDSESDSSSD YHKRDKHSSR SRRKQRESSR
901: EKRSGHKKHS KHYKTKDSSS SRYSGDEERK ESKREKRRRR D
001: MGSDEEDFVF HGTPIEREEE IASRKKKAVA GASGNLRTLP AWKQEVTDEE GRRRFHGAFT GGYSAGYYNT VGSKEGWAPQ SFTSSRQNRA GARKQSISDF
101: LDEDEKADME GKSLSASSQF DTFGFTAAEH SRKHAEKEQH ERPSAIPGPV PDELVAPVSE SIGVKLLLKM GWRRGHSIKE VRASSDARRE ARKAFLAFYT
201: DENTKETPDS LVSETEVETS LGEDIKISES TPVYVLNPKQ DLHGLGYDPF KHAPEFREKK RSRMSANKEV GFRKPLSMKE SLFGPKSGKI APGFGIGALE
301: ELDVEDEDVY AGYDFDQTYV IEDEQPARQS NDNRLRLTSK EHDVLPGFGA AKNSDYSMER FNPPIIPKDF VARHKFSGPL EAETKPTVSA PPEVPPPADN
401: NLKLLIEGFA TFVSRCGKLY EDLSREKNQS NQLFDFLREG NGHDYYARRL WEEQQKRKDQ SKLTLDVKVS PTVQKMTAET RGSLLGEKPL QRSLKETDTS
501: ASSGGSFQFP TNLSDTFTKS ASSQEAADAV KPFKDDPAKQ ERFEQFLKEK YKGGLRTTDS NRVNSMSESA RAQERLDFEA AAEAIEKGKA YKEVRRATEQ
601: PLDFLAGGLQ FTSGGTEQIK DTGVVDMKSS KTYPKREEFQ WRPSPLLCKR FDLPDPFMGK LPPAPRARNK MDSLVFLPDT VKAASARQVS ESQVPKKETS
701: IEEPEVEVEV ENVERPVDLY KAIFSDDSED DEDQPMNGKI QEGQEKKNEA AATTLNRLIA GDFLESLGKE LGFEVPMEEE IKSRSKPEDS SDKRLDRPGL
801: KEKVEEKTSS LTLGSEEEKS RKKREKSPGK RSGGNDLSSS ESSGDERRRK RYNKKDRHRN DSESDSSSDY HSRDKQGSRS RSKRRESSRE KRSSHKKHSK
901: HRRTKKSSSS RYSSDEEQKE SRREKKRRRD
101: LDEDEKADME GKSLSASSQF DTFGFTAAEH SRKHAEKEQH ERPSAIPGPV PDELVAPVSE SIGVKLLLKM GWRRGHSIKE VRASSDARRE ARKAFLAFYT
201: DENTKETPDS LVSETEVETS LGEDIKISES TPVYVLNPKQ DLHGLGYDPF KHAPEFREKK RSRMSANKEV GFRKPLSMKE SLFGPKSGKI APGFGIGALE
301: ELDVEDEDVY AGYDFDQTYV IEDEQPARQS NDNRLRLTSK EHDVLPGFGA AKNSDYSMER FNPPIIPKDF VARHKFSGPL EAETKPTVSA PPEVPPPADN
401: NLKLLIEGFA TFVSRCGKLY EDLSREKNQS NQLFDFLREG NGHDYYARRL WEEQQKRKDQ SKLTLDVKVS PTVQKMTAET RGSLLGEKPL QRSLKETDTS
501: ASSGGSFQFP TNLSDTFTKS ASSQEAADAV KPFKDDPAKQ ERFEQFLKEK YKGGLRTTDS NRVNSMSESA RAQERLDFEA AAEAIEKGKA YKEVRRATEQ
601: PLDFLAGGLQ FTSGGTEQIK DTGVVDMKSS KTYPKREEFQ WRPSPLLCKR FDLPDPFMGK LPPAPRARNK MDSLVFLPDT VKAASARQVS ESQVPKKETS
701: IEEPEVEVEV ENVERPVDLY KAIFSDDSED DEDQPMNGKI QEGQEKKNEA AATTLNRLIA GDFLESLGKE LGFEVPMEEE IKSRSKPEDS SDKRLDRPGL
801: KEKVEEKTSS LTLGSEEEKS RKKREKSPGK RSGGNDLSSS ESSGDERRRK RYNKKDRHRN DSESDSSSDY HSRDKQGSRS RSKRRESSRE KRSSHKKHSK
901: HRRTKKSSSS RYSSDEEQKE SRREKKRRRD
Arabidopsis Description
TGHG patch domain-containing protein TGH [Source:UniProtKB/Swiss-Prot;Acc:Q8GXN9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.