Factsheet for VIT_17s0000g04440.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_06s0004g00180.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G23080.1	VIT_06s0004g00180.t01	AT1G55520.1	16024589

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_17s0000g04410.t01	Wine grape	cytosol	5.92	74.68
AT5G23080.1	Thale cress	nucleus	54.66	58.6
Solyc03g114410.2.1	Tomato	nucleus	56.77	57.52
KRH03843	Soybean	nucleus	57.77	57.37
CDY02204	Canola	nucleus	54.06	57.28
CDY67704	Canola	nucleus	53.86	56.83
Bra035958.1-P	Field mustard	nucleus	53.56	56.21
CDY16838	Canola	nucleus	53.56	56.21
KRH56717	Soybean	nucleus	56.77	55.82
CDX87186	Canola	nucleus	52.36	55.12
Bra013015.1-P	Field mustard	nucleus	43.43	53.99
Os06t0489200-01	Rice	nucleus	46.84	47.46
TraesCS7A01G231500.1	Wheat	nucleus	46.84	47.12
TraesCS7B01G129900.1	Wheat	nucleus	46.64	46.92
TraesCS7D01G231700.1	Wheat	nucleus	46.44	46.72
KXG19969	Sorghum	nucleus	45.94	46.08
Zm00001d045954_P004	Maize	nucleus	45.64	46.01
GSMUA_Achr8P03600_001	Banana	nucleus	49.95	44.99
HORVU7Hr1G047420.9	Barley	mitochondrion	37.21	36.27

Protein Annotations

Gene3D:1.10.10.790	EntrezGene:100242404	wikigene:100242404	MapMan:16.10.2.1.4	ProteinID:CCB43177	ProteinID:CCB43177.1
InterPro:DUF1604	UniProt:F6GTG8	EMBL:FN594950	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006396	GO:GO:0006397	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0010087	GO:GO:0019538	GO:GO:0030422	GO:GO:0035196	GO:GO:0040029
GO:GO:0070878	GO:GO:0070883	InterPro:IPR000061	InterPro:IPR035967	EntrezGene:LOC100242404	wikigene:LOC100242404
PFAM:PF01805	PFAM:PF07713	PFscan:PS50128	PANTHER:PTHR13384	PANTHER:PTHR13384:SF19	SMART:SM00648
SUPFAM:SSF109905	InterPro:SWAP/Surp_sf	InterPro:Surp	UniParc:UPI0001985064	ArrayExpress:VIT_17s0000g04440	EnsemblPlantsGene:VIT_17s0000g04440
EnsemblPlants:VIT_17s0000g04440.t01	unigene:Vvi.12421	RefSeq:XP_002271556	RefSeq:XP_002271556.1	SEG:seg	:

Description

No Description!

Coordinates

chr17:+:4682185..4698560

Molecular Weight (calculated)

111795.0 Da

IEP (calculated)

6.756

GRAVY (calculated)

-0.942

Length

997 amino acids

Sequence
(BLAST)

001: MDADEEDYVF YGTPIEREEE MTSRKKKAVA ESSGLLRSLP PWKQEVTDEE GRRRFHGAFT GGFSAGFYNT VGSKEGWAPQ SFTSSRKNRA EVKKQSIFSF
101: LDDDEIAEME GHSLGTSLQF DTFGFTAAEL ARKQAEKEQQ QRPSAIPGPL PDEIVLLATE SIGVKLLLKM GWRRGNSIKD SHTNSLYDAR REARKAFLAL
201: SSDDVSTDLA VSEGVKSDLQ NAIELPANDD LKSSESTPVY VLNPKQDLHG LGYDPFKHAP EFREKKRLRM SGKKELGLKN DLFAFKSRKV APGFGIGALE
301: ELDVEDEDVY ASGYDFEDNY IQEVEEPSGL VIESKQKLGS KEKGVLSGFK VASKLDYQLE RFDPPVVPKN FVPHHKFHAP LDDSNKHDGD PPPPEAIAPE
401: DNNLKLLIEG VATLVARCGK LFEDLSREKN QSNPLFSFLT GGNGCDYYAR KLWEERQKHN DKSKQLLDVK SSPTVQKMTA ESRGKILGER PLERSSRDTN
501: SSVASADVIQ LQFNLSDTFT KPASLKELSE IAKPFKEDPA KQERFELFLK EKYHGGLRST DSGGASNMSE AARAREKLDF EAAAETIEKG LRGKESNLST
601: QQFMEMSATA VMEFAPGGLE QAKVTQAEEL VIKKMYPKRE EFQWRPSPIL CKRFDIIDPF MGKPPPAPRR RSKMDSLVFT SDSVKSTTVD ETVTSKLPVA
701: QLDPQQFSTD VNAREIEVNM EVEKVERPVD LYKAIFSDDS DDEVENSTSN QVDDPKRKIE AANTTLNRLM AGDFLESLGK ELGLEVPPDM PQSINKARTS
801: APKKESNDVN PGNISSLAVE NKPSSTYTAV KGTSVNQEAP HDKAYDQEST QEVRSQNNEL MLDSPSGSKI KVTGSSENES SKIKAEKMDQ EGRKAKTPTG
901: HRQNWSSDSS SEDERSRKRS RRRRHRSDSS DTDISSDHQD RYHSRSKGRK KGSSREKSSS SRRYSKHHKR GSRDSPSRSS RHSSERERSE SKREKRR

Best Arabidopsis Sequence Match ( AT5G23080.1 )
(BLAST)

001: MGSDEEDFVF HGTPIEREEE IASRKKKAVA GASGNLRTLP AWKQEVTDEE GRRRFHGAFT GGYSAGYYNT VGSKEGWAPQ SFTSSRQNRA GARKQSISDF
101: LDEDEKADME GKSLSASSQF DTFGFTAAEH SRKHAEKEQH ERPSAIPGPV PDELVAPVSE SIGVKLLLKM GWRRGHSIKE VRASSDARRE ARKAFLAFYT
201: DENTKETPDS LVSETEVETS LGEDIKISES TPVYVLNPKQ DLHGLGYDPF KHAPEFREKK RSRMSANKEV GFRKPLSMKE SLFGPKSGKI APGFGIGALE
301: ELDVEDEDVY AGYDFDQTYV IEDEQPARQS NDNRLRLTSK EHDVLPGFGA AKNSDYSMER FNPPIIPKDF VARHKFSGPL EAETKPTVSA PPEVPPPADN
401: NLKLLIEGFA TFVSRCGKLY EDLSREKNQS NQLFDFLREG NGHDYYARRL WEEQQKRKDQ SKLTLDVKVS PTVQKMTAET RGSLLGEKPL QRSLKETDTS
501: ASSGGSFQFP TNLSDTFTKS ASSQEAADAV KPFKDDPAKQ ERFEQFLKEK YKGGLRTTDS NRVNSMSESA RAQERLDFEA AAEAIEKGKA YKEVRRATEQ
601: PLDFLAGGLQ FTSGGTEQIK DTGVVDMKSS KTYPKREEFQ WRPSPLLCKR FDLPDPFMGK LPPAPRARNK MDSLVFLPDT VKAASARQVS ESQVPKKETS
701: IEEPEVEVEV ENVERPVDLY KAIFSDDSED DEDQPMNGKI QEGQEKKNEA AATTLNRLIA GDFLESLGKE LGFEVPMEEE IKSRSKPEDS SDKRLDRPGL
801: KEKVEEKTSS LTLGSEEEKS RKKREKSPGK RSGGNDLSSS ESSGDERRRK RYNKKDRHRN DSESDSSSDY HSRDKQGSRS RSKRRESSRE KRSSHKKHSK
901: HRRTKKSSSS RYSSDEEQKE SRREKKRRRD

Arabidopsis Description

TGHG patch domain-containing protein TGH [Source:UniProtKB/Swiss-Prot;Acc:Q8GXN9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.