Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G23080.1 | CDY02435 | AT1G55520.1 | 16024589 |
| AT5G23080.1 | CDY08246 | AT1G55520.1 | 16024589 |
| AT5G23080.1 | CDY10555 | AT1G55520.1 | 16024589 |
| AT5G23080.1 | CDY26099 | AT1G55520.1 | 16024589 |
| AT5G23080.1 | CDY56078 | AT1G55520.1 | 16024589 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY16838 | Canola | nucleus | 93.77 | 93.47 |
| CDY02204 | Canola | nucleus | 85.96 | 86.5 |
| CDY67704 | Canola | nucleus | 85.64 | 85.82 |
| AT5G23080.1 | Thale cress | nucleus | 80.04 | 81.51 |
| KRH03843 | Soybean | nucleus | 56.6 | 53.39 |
| VIT_17s0000g04440.t01 | Wine grape | nucleus | 55.12 | 52.36 |
| KRH56717 | Soybean | nucleus | 55.54 | 51.87 |
| Solyc03g114410.2.1 | Tomato | nucleus | 52.16 | 50.2 |
| TraesCS7A01G231500.1 | Wheat | nucleus | 46.15 | 44.1 |
| TraesCS7B01G129900.1 | Wheat | nucleus | 45.93 | 43.9 |
| TraesCS7D01G231700.1 | Wheat | nucleus | 45.62 | 43.59 |
| Os06t0489200-01 | Rice | nucleus | 44.88 | 43.19 |
| Zm00001d045954_P004 | Maize | nucleus | 44.77 | 42.87 |
| KXG19969 | Sorghum | nucleus | 44.98 | 42.86 |
| GSMUA_Achr8P03600_001 | Banana | nucleus | 47.73 | 40.83 |
| HORVU7Hr1G047420.9 | Barley | mitochondrion | 36.33 | 33.63 |
Protein Annotations
| Gene3D:1.10.10.790 | MapMan:16.10.2.1.4 | GO:A0A078DD34 | EnsemblPlants:CDX87186 | ProteinID:CDX87186 | ProteinID:CDX87186.1 |
| InterPro:DUF1604 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0006139 |
| GO:GO:0006396 | GO:GO:0006397 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00146112001 |
| InterPro:IPR000061 | InterPro:IPR035967 | PFAM:PF01805 | PFAM:PF07713 | PFscan:PS50128 | PANTHER:PTHR13384 |
| PANTHER:PTHR13384:SF19 | SMART:SM00648 | SUPFAM:SSF109905 | InterPro:SWAP/Surp_sf | InterPro:Surp | UniParc:UPI0004EEC854 |
| SEG:seg | : | : | : | : | : |
Description
BnaC09g05010D
Coordinates
chrLK031849:+:996722..1002199
Molecular Weight (calculated)
106537.0 Da
IEP (calculated)
6.898
GRAVY (calculated)
-1.123
Length
947 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLEEDDFVF HGTPIEREDE IGSRKKKAVA GASGNLRTLP AWKQEVIDEE GRRRFHGAFT GGYSAGYYNT VGSKEGWAPQ SFTSSRKNRA GARKQNISDF
101: LDEDEKAELE GQSLSASSQF DTFGFTAAEH SRKQAEKERH ERPSAIPGPV HDELIAPVSE SVGVKLLLKM GWRRGHSIKD VRAGSDARRE ARKAVLAFSA
201: DESTKGSSDS LVLESEVKTS LDSQINEDIK FSETTPVYVL NPKQDLHGLG YDPFKHAPEF REKKRSRLSA GKEAGYKKPL SMKESLFGPN TGKIGPGFGI
301: GALEELDVED EDVYAGYDFN QTYVIEDEQP VRPHNDNTLR LTAKEHNVLP GFGAASNSDY SVERFDPPKI PKDFVARHKF LGPREAETKP TAVPPPDVSP
401: PEDKNLKLLI DGFATFVSRC GKLYEDLSRE KNESNQLFDF LPGGSGHDYY VRRLWEEQQK RGDQSNLQLD FKVPLSVEKM SAEKRGSLLG ERPLQKSLKE
501: TETSASSGGS FQFPTNLSDT FTKSASSQEA ADAVKPFKDD PAKQERFEQF LKEKYRGGLR TTDSSRFNSM SESARAQERL DFEAAAEAIE KGKAYKEVRR
601: ATERPIDFLA GGLQFTSGGT EQIKDSGVVD MKSSKTYPKR EEFQWRPAPL LCKRFDLPDP FMGKPGTAPR ARNKMDSLIF LPDTVKAASD LQEPKKETTV
701: EEPEVEVQVE NVERPVDLYK AIFSDDSEDD EEQPMNGKKE EGQEKKNEAA AATTLNRLIA GDFLESLGKE LGFEVPSNVT YPEGTKPVEE DSKSKRKSDA
801: SSERRPETKE KPEEKTSSLK LGSEGEKSTK RSEKSPRNWS GEEKSTKNKE ESPRNDLSSS DSSGDEGRRR RSKKDKHRNN DSESDSSSDY HSRDKRSSRS
901: RRKRRESSRE NRSSHKKHYK TKDSSSSRYS MDEDRKESRR EKRRHRD
101: LDEDEKAELE GQSLSASSQF DTFGFTAAEH SRKQAEKERH ERPSAIPGPV HDELIAPVSE SVGVKLLLKM GWRRGHSIKD VRAGSDARRE ARKAVLAFSA
201: DESTKGSSDS LVLESEVKTS LDSQINEDIK FSETTPVYVL NPKQDLHGLG YDPFKHAPEF REKKRSRLSA GKEAGYKKPL SMKESLFGPN TGKIGPGFGI
301: GALEELDVED EDVYAGYDFN QTYVIEDEQP VRPHNDNTLR LTAKEHNVLP GFGAASNSDY SVERFDPPKI PKDFVARHKF LGPREAETKP TAVPPPDVSP
401: PEDKNLKLLI DGFATFVSRC GKLYEDLSRE KNESNQLFDF LPGGSGHDYY VRRLWEEQQK RGDQSNLQLD FKVPLSVEKM SAEKRGSLLG ERPLQKSLKE
501: TETSASSGGS FQFPTNLSDT FTKSASSQEA ADAVKPFKDD PAKQERFEQF LKEKYRGGLR TTDSSRFNSM SESARAQERL DFEAAAEAIE KGKAYKEVRR
601: ATERPIDFLA GGLQFTSGGT EQIKDSGVVD MKSSKTYPKR EEFQWRPAPL LCKRFDLPDP FMGKPGTAPR ARNKMDSLIF LPDTVKAASD LQEPKKETTV
701: EEPEVEVQVE NVERPVDLYK AIFSDDSEDD EEQPMNGKKE EGQEKKNEAA AATTLNRLIA GDFLESLGKE LGFEVPSNVT YPEGTKPVEE DSKSKRKSDA
801: SSERRPETKE KPEEKTSSLK LGSEGEKSTK RSEKSPRNWS GEEKSTKNKE ESPRNDLSSS DSSGDEGRRR RSKKDKHRNN DSESDSSSDY HSRDKRSSRS
901: RRKRRESSRE NRSSHKKHYK TKDSSSSRYS MDEDRKESRR EKRRHRD
001: MGSDEEDFVF HGTPIEREEE IASRKKKAVA GASGNLRTLP AWKQEVTDEE GRRRFHGAFT GGYSAGYYNT VGSKEGWAPQ SFTSSRQNRA GARKQSISDF
101: LDEDEKADME GKSLSASSQF DTFGFTAAEH SRKHAEKEQH ERPSAIPGPV PDELVAPVSE SIGVKLLLKM GWRRGHSIKE VRASSDARRE ARKAFLAFYT
201: DENTKETPDS LVSETEVETS LGEDIKISES TPVYVLNPKQ DLHGLGYDPF KHAPEFREKK RSRMSANKEV GFRKPLSMKE SLFGPKSGKI APGFGIGALE
301: ELDVEDEDVY AGYDFDQTYV IEDEQPARQS NDNRLRLTSK EHDVLPGFGA AKNSDYSMER FNPPIIPKDF VARHKFSGPL EAETKPTVSA PPEVPPPADN
401: NLKLLIEGFA TFVSRCGKLY EDLSREKNQS NQLFDFLREG NGHDYYARRL WEEQQKRKDQ SKLTLDVKVS PTVQKMTAET RGSLLGEKPL QRSLKETDTS
501: ASSGGSFQFP TNLSDTFTKS ASSQEAADAV KPFKDDPAKQ ERFEQFLKEK YKGGLRTTDS NRVNSMSESA RAQERLDFEA AAEAIEKGKA YKEVRRATEQ
601: PLDFLAGGLQ FTSGGTEQIK DTGVVDMKSS KTYPKREEFQ WRPSPLLCKR FDLPDPFMGK LPPAPRARNK MDSLVFLPDT VKAASARQVS ESQVPKKETS
701: IEEPEVEVEV ENVERPVDLY KAIFSDDSED DEDQPMNGKI QEGQEKKNEA AATTLNRLIA GDFLESLGKE LGFEVPMEEE IKSRSKPEDS SDKRLDRPGL
801: KEKVEEKTSS LTLGSEEEKS RKKREKSPGK RSGGNDLSSS ESSGDERRRK RYNKKDRHRN DSESDSSSDY HSRDKQGSRS RSKRRESSRE KRSSHKKHSK
901: HRRTKKSSSS RYSSDEEQKE SRREKKRRRD
101: LDEDEKADME GKSLSASSQF DTFGFTAAEH SRKHAEKEQH ERPSAIPGPV PDELVAPVSE SIGVKLLLKM GWRRGHSIKE VRASSDARRE ARKAFLAFYT
201: DENTKETPDS LVSETEVETS LGEDIKISES TPVYVLNPKQ DLHGLGYDPF KHAPEFREKK RSRMSANKEV GFRKPLSMKE SLFGPKSGKI APGFGIGALE
301: ELDVEDEDVY AGYDFDQTYV IEDEQPARQS NDNRLRLTSK EHDVLPGFGA AKNSDYSMER FNPPIIPKDF VARHKFSGPL EAETKPTVSA PPEVPPPADN
401: NLKLLIEGFA TFVSRCGKLY EDLSREKNQS NQLFDFLREG NGHDYYARRL WEEQQKRKDQ SKLTLDVKVS PTVQKMTAET RGSLLGEKPL QRSLKETDTS
501: ASSGGSFQFP TNLSDTFTKS ASSQEAADAV KPFKDDPAKQ ERFEQFLKEK YKGGLRTTDS NRVNSMSESA RAQERLDFEA AAEAIEKGKA YKEVRRATEQ
601: PLDFLAGGLQ FTSGGTEQIK DTGVVDMKSS KTYPKREEFQ WRPSPLLCKR FDLPDPFMGK LPPAPRARNK MDSLVFLPDT VKAASARQVS ESQVPKKETS
701: IEEPEVEVEV ENVERPVDLY KAIFSDDSED DEDQPMNGKI QEGQEKKNEA AATTLNRLIA GDFLESLGKE LGFEVPMEEE IKSRSKPEDS SDKRLDRPGL
801: KEKVEEKTSS LTLGSEEEKS RKKREKSPGK RSGGNDLSSS ESSGDERRRK RYNKKDRHRN DSESDSSSDY HSRDKQGSRS RSKRRESSRE KRSSHKKHSK
901: HRRTKKSSSS RYSSDEEQKE SRREKKRRRD
Arabidopsis Description
TGHG patch domain-containing protein TGH [Source:UniProtKB/Swiss-Prot;Acc:Q8GXN9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.