Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY09928 | Canola | cytosol, golgi, nucleus | 87.71 | 84.86 |
| Bra005902.1-P | Field mustard | nucleus | 88.83 | 76.44 |
| Bra027434.1-P | Field mustard | nucleus | 79.33 | 71.0 |
| Bra011920.1-P | Field mustard | nucleus | 78.77 | 70.5 |
| Bra030855.1-P | Field mustard | nucleus | 77.09 | 69.0 |
| Bra028725.1-P | Field mustard | nucleus | 76.54 | 67.16 |
| GSMUA_Achr6P29890_001 | Banana | nucleus | 66.48 | 57.49 |
| Zm00001d029737_P001 | Maize | nucleus, plasma membrane, plastid | 18.44 | 31.13 |
| Zm00001d019598_P002 | Maize | nucleus | 32.4 | 19.21 |
Protein Annotations
| MapMan:15.3.5.3.1 | MapMan:15.4.1 | Gene3D:3.30.310.10 | EnsemblPlantsGene:Bra005905 | EnsemblPlants:Bra005905.1 | EnsemblPlants:Bra005905.1-P |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006352 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR012295 | UniProt:M4CNW7 |
| PFAM:PF00352 | PRINTS:PR00686 | PANTHER:PTHR10126 | PANTHER:PTHR10126:SF36 | SUPFAM:SSF55945 | InterPro:TBP |
| InterPro:TBP_dom_sf | InterPro:TBP_eukaryotic | UniParc:UPI000253F64D | : | : | : |
Description
AT3G13445 (E=2e-040) TBP1, TFIID-1 | TBP1 (TATA BINDING PROTEIN 1); DNA binding / RNA polymerase II transcription factor/ binding
Coordinates
chrA03:-:1131887..1132514
Molecular Weight (calculated)
20109.6 Da
IEP (calculated)
9.876
GRAVY (calculated)
-0.111
Length
179 amino acids
Sequence
(BLAST)
(BLAST)
001: MSDQDFDGSS EPVDLINHPS GIVPTVQNIV STVNLDCKLE LKAIALQARN AEYNPKRFAA VIMRIREPKT TALIFASGRM VCTGAKTEDS SKLAARNFPI
101: WLEGLAYYHH AFASYEPEMF PGLIYRIRGM KGMKGAQIVL LIFVSGKIVI TGAKKREETY KAFENIYPVL TQFQKKFTR
101: WLEGLAYYHH AFASYEPEMF PGLIYRIRGM KGMKGAQIVL LIFVSGKIVI TGAKKREETY KAFENIYPVL TQFQKKFTR
001: MADQGTEGSQ PVDLTKHPSG IVPTLQNIVS TVNLDCKLDL KAIALQARNA EYNPKRFAAV IMRIREPKTT ALIFASGKMV CTGAKSEHLS KLAARKYARI
101: VQKLGFPAKF KDFKIQNIVG SCDVKFPIRL EGLAYSHSAF SSYEPELFPG LIYRMKLPKI VLLIFVSGKI VITGAKMREE TYTAFENIYP VLREFRKVQQ
101: VQKLGFPAKF KDFKIQNIVG SCDVKFPIRL EGLAYSHSAF SSYEPELFPG LIYRMKLPKI VLLIFVSGKI VITGAKMREE TYTAFENIYP VLREFRKVQQ
Arabidopsis Description
TBP2TATA-box-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:P28148]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.