Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- nucleus 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY55770 | Canola | mitochondrion | 12.58 | 62.3 |
| CDX81012 | Canola | mitochondrion | 12.25 | 60.66 |
| Zm00001d033472_P004 | Maize | nucleus | 30.46 | 42.79 |
| Zm00001d027501_P001 | Maize | mitochondrion, nucleus | 19.87 | 41.67 |
| Zm00001d029737_P001 | Maize | nucleus, plasma membrane, plastid | 14.24 | 40.57 |
| CDY55768 | Canola | cytoskeleton, cytosol, nucleus | 23.51 | 40.34 |
| CDY14075 | Canola | nucleus | 26.49 | 39.22 |
| CDY04996 | Canola | nucleus | 26.16 | 38.73 |
| Bra028725.1-P | Field mustard | nucleus | 26.16 | 38.73 |
| CDY09928 | Canola | cytosol, golgi, nucleus | 22.85 | 37.3 |
| Bra005902.1-P | Field mustard | nucleus | 25.5 | 37.02 |
| GSMUA_Achr6P29890_001 | Banana | nucleus | 25.17 | 36.72 |
| Bra005905.1-P | Field mustard | nucleus | 19.21 | 32.4 |
| Zm00001d013631_P001 | Maize | nucleus | 30.46 | 23.47 |
| Zm00001d013856_P001 | Maize | nucleus | 10.26 | 19.87 |
| CDX81013 | Canola | nucleus | 3.97 | 17.91 |
| CDY55771 | Canola | nucleus | 3.64 | 16.42 |
Protein Annotations
| Gene3D:3.30.310.10 | MapMan:35.1 | UniProt:A0A1D6HZ79 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006352 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | InterPro:IPR012295 | ProteinID:ONM53388.1 | PFAM:PF00352 | PRINTS:PR00686 | PANTHER:PTHR10126 |
| PANTHER:PTHR10126:SF36 | SUPFAM:SSF55945 | InterPro:TBP | InterPro:TBP_dom_sf | UniParc:UPI000842AE4F | EnsemblPlantsGene:Zm00001d019598 |
| EnsemblPlants:Zm00001d019598_P002 | EnsemblPlants:Zm00001d019598_T002 | SEG:seg | : | : | : |
Description
TATA-box-binding protein 2
Coordinates
chr7:+:45816670..45821314
Molecular Weight (calculated)
33677.9 Da
IEP (calculated)
10.602
GRAVY (calculated)
-0.224
Length
302 amino acids
Sequence
(BLAST)
(BLAST)
001: MRFVRQGSPS STHPWRTISS SPEMGLVPGK KQLMAQSCHQ QQLIWDFHEP EQRSSGPFKS PDLGAHGMAG LLSLRAGPRS SPSLARSSSA WASPASQVVV
101: RLTSPQFRCA RLCNSRSLLA AAVKISKDGS SAVLANSLPF KELTLAWCSQ GHDRDCSVEE ALAARLSLIK PSLSQVEECP EKRPPSVNTY LIVCSHHQKL
201: GFPAKFKDFK IQNIVRSCDV IFRTLFGPVM SNPQSGSRVL HTLTYETELF SGLIYRMKRQ KIMLLIFVSG KIVLTRAKVR DETYTAFENI YPVLTKFRKV
301: RQ
101: RLTSPQFRCA RLCNSRSLLA AAVKISKDGS SAVLANSLPF KELTLAWCSQ GHDRDCSVEE ALAARLSLIK PSLSQVEECP EKRPPSVNTY LIVCSHHQKL
201: GFPAKFKDFK IQNIVRSCDV IFRTLFGPVM SNPQSGSRVL HTLTYETELF SGLIYRMKRQ KIMLLIFVSG KIVLTRAKVR DETYTAFENI YPVLTKFRKV
301: RQ
001: MTDQGLEGSN PVDLSKHPSG IVPTLQNIVS TVNLDCKLDL KAIALQARNA EYNPKRFAAV IMRIREPKTT ALIFASGKMV CTGAKSEDFS KMAARKYARI
101: VQKLGFPAKF KDFKIQNIVG SCDVKFPIRL EGLAYSHAAF SSYEPELFPG LIYRMKVPKI VLLIFVSGKI VITGAKMRDE TYKAFENIYP VLSEFRKIQQ
101: VQKLGFPAKF KDFKIQNIVG SCDVKFPIRL EGLAYSHAAF SSYEPELFPG LIYRMKVPKI VLLIFVSGKI VITGAKMRDE TYKAFENIYP VLSEFRKIQQ
Arabidopsis Description
TBP1TATA-box-binding protein 1 [Source:UniProtKB/Swiss-Prot;Acc:P28147]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.