Factsheet for Zm00001d033472_P004

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES16412	Sorghum	nucleus	90.23	97.0
TraesCS4A01G298000.1	Wheat	nucleus	90.23	97.0
TraesCS4D01G014000.2	Wheat	nucleus	90.23	97.0
TraesCS5A01G022000.1	Wheat	nucleus	88.84	95.5
TraesCS5D01G027800.3	Wheat	nucleus	88.84	95.5
Os03t0657000-01	Rice	nucleus	88.37	93.6
TraesCS5B01G018500.1	Wheat	nucleus	87.44	93.53
Os12t0580300-01	Rice	nucleus	87.44	90.38
TraesCS4B01G015700.2	Wheat	nucleus	81.86	78.57
Zm00001d027501_P001	Maize	mitochondrion, nucleus	47.44	70.83
HORVU4Hr1G002400.5	Barley	golgi	90.23	57.57
Zm00001d013856_P001	Maize	nucleus	37.67	51.92
Zm00001d013631_P001	Maize	nucleus	91.16	50.0
Zm00001d029737_P001	Maize	nucleus, plasma membrane, plastid	18.6	37.74
Zm00001d019598_P002	Maize	nucleus	42.79	30.46

Protein Annotations

MapMan:15.3.5.3.1	MapMan:15.4.1	Gene3D:3.30.310.10	EntrezGene:542240	UniProt:A0A1D6KZ57	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006352	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR012295	HAMAP:MF_00408	ProteinID:ONM07658.1	PFAM:PF00352
PRINTS:PR00686	ScanProsite:PS00351	PANTHER:PTHR10126	PANTHER:PTHR10126:SF36	SUPFAM:SSF55945	InterPro:TBP
InterPro:TBP_CS	InterPro:TBP_dom_sf	InterPro:TBP_eukaryotic	UniParc:UPI000221477C	EnsemblPlantsGene:Zm00001d033472	EnsemblPlants:Zm00001d033472_P004
EnsemblPlants:Zm00001d033472_T004	:	:	:	:	:

Description

TATA-binding protein1 TATA-binding protein1

Coordinates

chr1:-:263623551..263627725

Molecular Weight (calculated)

24171.8 Da

IEP (calculated)

10.134

GRAVY (calculated)

0.042

Length

215 amino acids

Sequence
(BLAST)

001: MAEPGLEDSQ PVDLSKHPSG IVPTLQNIVS TVNLDCKLDL KAIALQARNA EYNPKRFAAV IMRIREPKTT ALIFASGKMV CTGAKSEQQS KLAARKYARI
101: IQKLGFPAKF KDFKIQNIVG SCDVKFPIRL EGLAYSHGAF SSYEPELFPG LIYRMKQPKI VLLIFVSGKI VLTGAKVREE TYTAFENIYP VLAEFRKVQQ
201: WYVVLFYHVS IIVRA

Best Arabidopsis Sequence Match ( AT1G55520.4 )
(BLAST)

001: MADQGTEGSQ PVDLTKHPSG IVPTLQNIVS TVNLDCKLDL KAIALQARNA EYNPKRFAAV IMRIREPKTT ALIFASGKMV CTGAKSEHLS KLAARKYARI
101: VQKLGFPAKF KDFKIQNIVG SCDVKFPIRL EGLAYSHSAF SSYEPELFPG LIYRMKLPKI VLLIFVSGKI VITGAKMREE TYTAFENIYP VLREFRKVQQ

Arabidopsis Description

TBP2TATA-box-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:P28148]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.