Factsheet for Zm00001d013631_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES16412	Sorghum	nucleus	48.98	96.0
TraesCS4A01G298000.1	Wheat	nucleus	48.98	96.0
TraesCS4D01G014000.2	Wheat	nucleus	48.98	96.0
TraesCS5A01G022000.1	Wheat	nucleus	48.21	94.5
TraesCS5D01G027800.3	Wheat	nucleus	48.21	94.5
Os03t0657000-01	Rice	nucleus	47.96	92.61
TraesCS5B01G018500.1	Wheat	nucleus	47.45	92.54
Zm00001d033472_P004	Maize	nucleus	50.0	91.16
Os12t0580300-01	Rice	nucleus	47.96	90.38
TraesCS4B01G015700.2	Wheat	nucleus	44.39	77.68
Zm00001d027501_P001	Maize	mitochondrion, nucleus	26.02	70.83
HORVU4Hr1G002400.5	Barley	golgi	48.98	56.97
Zm00001d013856_P001	Maize	nucleus	20.66	51.92
Zm00001d029737_P001	Maize	nucleus, plasma membrane, plastid	10.2	37.74
Zm00001d019598_P002	Maize	nucleus	23.47	30.46

Protein Annotations

MapMan:15.3.5.3.1	MapMan:15.4.1	Gene3D:3.30.310.10	EntrezGene:542241	ProteinID:AAT42173.1	ProteinID:AQK64056.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0006139	GO:GO:0006352
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR012295	HAMAP:MF_00408
PFAM:PF00352	PRINTS:PR00686	ScanProsite:PS00351	PANTHER:PTHR10126	PANTHER:PTHR10126:SF36	UniProt:Q6JAE2
SUPFAM:SSF55945	InterPro:TBP	InterPro:TBP_CS	InterPro:TBP_dom_sf	InterPro:TBP_eukaryotic	UniParc:UPI00003B042D
EnsemblPlantsGene:Zm00001d013631	EnsemblPlants:Zm00001d013631_P001	EnsemblPlants:Zm00001d013631_T001	SEG:seg	:	:

Description

TATA-binding protein2TATA-box-binding protein 2

Coordinates

chr5:-:15866934..15871877

Molecular Weight (calculated)

43695.1 Da

IEP (calculated)

9.828

GRAVY (calculated)

-0.081

Length

392 amino acids

Sequence
(BLAST)

001: MAEPGLEGSQ PVDLSKHPSG IVPTLHGIFL KCVGSSVPLN RGMKPFLAAI SVSPGASAFK RRGTWGSFEL KESGGNEMDG EYARHWMSAD VKSRVSSSVG
101: RSGSDDLFRP YEISGWAGYA SLVAAILKLH ETVRMDWPNS WAAVVPSSSV MLRDCGTMLK IRLCSHEEGN KDRNIVSTVN LDCKLDLKAI ALQARNAEYN
201: PKRFAAVIMR IREPKTTALI FASGKMVCTG AKSEQQSKLA ARKYARIIQK LGFPAKFKDF KIQNIVGSCD VKFPIRLEGL AYSHGAFSSY EPELFPGLIY
301: RMKQPKIVLL IFVSGKIVLT GAKVREETYT AFENIYPVLS EFRKIQQWVD GYSVQLTYVM YSFMEHVWDW APMTCDVKVT FFKLQASSRI LV

Best Arabidopsis Sequence Match ( AT1G55520.1 )
(BLAST)

001: MADQGTEGSQ PVDLTKHPSG IVPTLQNIVS TVNLDCKLDL KAIALQARNA EYNPKRFAAV IMRIREPKTT ALIFASGKMV CTGAKSEHLS KLAARKYARI
101: VQKLGFPAKF KDFKIQNIVG SCDVKFPIRL EGLAYSHSAF SSYEPELFPG LIYRMKLPKI VLLIFVSGKI VITGAKMREE TYTAFENIYP VLREFRKVQQ

Arabidopsis Description

TBP2TATA-box-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:P28148]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.