Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY55771 | Canola | nucleus | 97.01 | 97.01 |
| CDY09928 | Canola | cytosol, golgi, nucleus | 85.07 | 30.81 |
| CDY55768 | Canola | cytoskeleton, cytosol, nucleus | 80.6 | 30.68 |
| CDY56078 | Canola | nucleus | 55.22 | 28.68 |
| CDY08246 | Canola | nucleus | 83.58 | 28.0 |
| CDY26099 | Canola | nucleus | 83.58 | 28.0 |
| CDY02435 | Canola | nucleus | 79.1 | 26.5 |
| CDY10555 | Canola | nucleus | 79.1 | 26.5 |
| CDY04996 | Canola | nucleus | 79.1 | 25.98 |
| CDY14075 | Canola | nucleus | 76.12 | 25.0 |
| GSMUA_Achr6P29890_001 | Banana | nucleus | 64.18 | 20.77 |
| CDY23601 | Canola | mitochondrion, nucleus, plastid | 82.09 | 17.3 |
| Zm00001d019598_P002 | Maize | nucleus | 17.91 | 3.97 |
| Zm00001d029737_P001 | Maize | nucleus, plasma membrane, plastid | 2.99 | 1.89 |
| CDX81012 | Canola | mitochondrion | 0.0 | 0.0 |
| CDY55770 | Canola | mitochondrion | 0.0 | 0.0 |
Protein Annotations
| Gene3D:3.30.310.10 | MapMan:35.1 | GO:A0A078D129 | EnsemblPlants:CDX81013 | ProteinID:CDX81013 | ProteinID:CDX81013.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006352 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00134445001 | InterPro:IPR012295 |
| PFAM:PF00352 | PRINTS:PR00686 | PANTHER:PTHR10126 | PANTHER:PTHR10126:SF36 | SUPFAM:SSF55945 | InterPro:TBP |
| InterPro:TBP_dom_sf | UniParc:UPI0004EDC3DC | : | : | : | : |
Description
BnaC03g02670D
Coordinates
chrLK031823:-:1266692..1267062
Molecular Weight (calculated)
7322.6 Da
IEP (calculated)
5.571
GRAVY (calculated)
-0.293
Length
67 amino acids
Sequence
(BLAST)
(BLAST)
1: MSDQDFEGSS EPVDLINHPS GIVPTLQNIV STVNLDCKLD LKAIALQARN AEYNPKHSSK LAARNFV
001: MADQGTEGSQ PVDLTKHPSG IVPTLQNIVS TVNLDCKLDL KAIALQARNA EYNPKRFAAV IMRIREPKTT ALIFASGKMV CTGAKSEHLS KLAARKYARI
101: VQKLGFPAKF KDFKIQNIVG SCDVKFPIRL EGLAYSHSAF SSYEPELFPG LIYRMKLPKI VLLIFVSGKI VITGAKMREE TYTAFENIYP VLREFRKVQQ
101: VQKLGFPAKF KDFKIQNIVG SCDVKFPIRL EGLAYSHSAF SSYEPELFPG LIYRMKLPKI VLLIFVSGKI VITGAKMREE TYTAFENIYP VLREFRKVQQ
Arabidopsis Description
TBP2TATA-box-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:P28148]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.