Subcellular Localization
min:
: max
Winner_takes_all: golgi, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY55770 | Canola | mitochondrion | 32.43 | 98.36 |
| CDX81012 | Canola | mitochondrion | 31.89 | 96.72 |
| Bra005905.1-P | Field mustard | nucleus | 84.86 | 87.71 |
| CDX81013 | Canola | nucleus | 30.81 | 85.07 |
| CDY55771 | Canola | nucleus | 29.73 | 82.09 |
| CDY55768 | Canola | cytoskeleton, cytosol, nucleus | 74.59 | 78.41 |
| CDY08246 | Canola | nucleus | 80.0 | 74.0 |
| CDY26099 | Canola | nucleus | 80.0 | 74.0 |
| CDY02435 | Canola | nucleus | 78.38 | 72.5 |
| CDY10555 | Canola | nucleus | 78.38 | 72.5 |
| CDY04996 | Canola | nucleus | 77.84 | 70.59 |
| CDY14075 | Canola | nucleus | 77.84 | 70.59 |
| CDY56078 | Canola | nucleus | 41.62 | 59.69 |
| GSMUA_Achr6P29890_001 | Banana | nucleus | 65.95 | 58.94 |
| CDY23601 | Canola | mitochondrion, nucleus, plastid | 81.08 | 47.17 |
| Zm00001d029737_P001 | Maize | nucleus, plasma membrane, plastid | 17.3 | 30.19 |
| Zm00001d019598_P002 | Maize | nucleus | 37.3 | 22.85 |
Protein Annotations
| MapMan:15.3.5.3.1 | MapMan:15.4.1 | Gene3D:3.30.310.10 | GO:A0A078FCZ4 | UniProt:A0A078FCZ4 | EnsemblPlants:CDY09928 |
| ProteinID:CDY09928 | ProteinID:CDY09928.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0006139 | GO:GO:0006352 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| EnsemblPlantsGene:GSBRNA2T00031697001 | InterPro:IPR012295 | PFAM:PF00352 | PRINTS:PR00686 | PANTHER:PTHR10126 | PANTHER:PTHR10126:SF36 |
| SUPFAM:SSF55945 | InterPro:TBP | InterPro:TBP_dom_sf | InterPro:TBP_eukaryotic | UniParc:UPI0004EB62D4 | : |
Description
BnaC08g45230DBnaC08g45230D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FCZ4]
Coordinates
chrLK032000:-:121127..121761
Molecular Weight (calculated)
20972.8 Da
IEP (calculated)
10.070
GRAVY (calculated)
-0.081
Length
185 amino acids
Sequence
(BLAST)
(BLAST)
001: MSDQDFEGSS EPVDLINHPS GIVPTLQNIV STVNLDCKLD LKAIALQARN AEYNPKRFAA VIMRIREPKT TALIFASGRM KLGFQAKFKD FKIQNIVASC
101: DVKFPIWLEG LAYYHHAFAS YEPEMFPGLI YRIRGMKGMK GAQIVLLIFV SGKIAITGAK KREETYKAFE NIYPVLTQFQ KKFTR
101: DVKFPIWLEG LAYYHHAFAS YEPEMFPGLI YRIRGMKGMK GAQIVLLIFV SGKIAITGAK KREETYKAFE NIYPVLTQFQ KKFTR
001: MADQGTEGSQ PVDLTKHPSG IVPTLQNIVS TVNLDCKLDL KAIALQARNA EYNPKRFAAV IMRIREPKTT ALIFASGKMV CTGAKSEHLS KLAARKYARI
101: VQKLGFPAKF KDFKIQNIVG SCDVKFPIRL EGLAYSHSAF SSYEPELFPG LIYRMKLPKI VLLIFVSGKI VITGAKMREE TYTAFENIYP VLREFRKVQQ
101: VQKLGFPAKF KDFKIQNIVG SCDVKFPIRL EGLAYSHSAF SSYEPELFPG LIYRMKLPKI VLLIFVSGKI VITGAKMREE TYTAFENIYP VLREFRKVQQ
Arabidopsis Description
TBP2TATA-box-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:P28148]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.