Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G385800.1 | Wheat | nucleus | 85.87 | 86.81 |
| TraesCSU01G127300.1 | Wheat | nucleus | 77.17 | 77.45 |
| HORVU4Hr1G090090.4 | Barley | nucleus, plastid | 70.29 | 65.32 |
| Zm00001d016255_P001 | Maize | nucleus | 56.52 | 60.7 |
| KXG29862 | Sorghum | nucleus | 56.88 | 58.8 |
| Os02t0232000-01 | Rice | nucleus | 60.87 | 56.38 |
| GSMUA_Achr4P30990_001 | Banana | nucleus | 52.17 | 49.83 |
| GSMUA_Achr10P... | Banana | nucleus | 49.64 | 44.92 |
| Bra013253.1-P | Field mustard | nucleus | 37.32 | 36.65 |
| CDX93024 | Canola | nucleus | 39.86 | 35.95 |
| Bra015050.1-P | Field mustard | nucleus | 39.49 | 35.28 |
| CDY50608 | Canola | nucleus | 40.22 | 35.24 |
| KRH39283 | Soybean | nucleus | 40.58 | 35.0 |
| CDX77420 | Canola | nucleus | 38.77 | 34.08 |
| CDY39545 | Canola | nucleus | 38.41 | 33.76 |
| AT3G24520.1 | Thale cress | nucleus | 39.49 | 33.03 |
| VIT_11s0016g03940.t01 | Wine grape | nucleus | 37.32 | 31.31 |
| CDY43158 | Canola | nucleus | 31.52 | 28.43 |
| Solyc12g007070.1.1 | Tomato | nucleus | 36.96 | 27.64 |
| PGSC0003DMT400001025 | Potato | nucleus | 36.23 | 27.17 |
| CDY43157 | Canola | cytosol | 0.72 | 2.22 |
Protein Annotations
| Gene3D:1.10.10.10 | MapMan:15.5.13 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| InterPro:HSF_DNA-bd | InterPro:HSF_fam | InterPro:IPR036388 | PFAM:PF00447 | PRINTS:PR00056 | ScanProsite:PS00434 |
| PANTHER:PTHR10015 | PANTHER:PTHR10015:SF171 | SMART:SM00415 | SUPFAM:SSF46785 | EnsemblPlantsGene:TraesCSU01G127200 | EnsemblPlants:TraesCSU01G127200.1 |
| InterPro:WH-like_DNA-bd_sf | InterPro:WH_DNA-bd_sf | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chrUn:-:109028414..109029244
Molecular Weight (calculated)
29853.0 Da
IEP (calculated)
5.211
GRAVY (calculated)
-0.348
Length
276 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGGGIESSF SGSYGVGAAG VAPFVAKTYG MVDDRATDAV VAWGPAGNSF VVADPFAFSQ ALLPAHFKHA NFSSFVRQLN TYGFRKVDPD RWEFAHASFL
101: RGQTHLLRHI VRRQSGGKRG GKDGKEVGDE EEDEESSSAV LAMEVVRLRE EQRATEQRVA EMWRRVQDAE RRPKLMLAFL LKVVGDPDVL RRLAGSSASV
201: SGLDEGAEEV KRPRLLLDGD GVGVDGLLYH HGGNLNMEEA LVPEPSVDMY YAGGDGFGGV QADGGPPYAF HMDSGY
101: RGQTHLLRHI VRRQSGGKRG GKDGKEVGDE EEDEESSSAV LAMEVVRLRE EQRATEQRVA EMWRRVQDAE RRPKLMLAFL LKVVGDPDVL RRLAGSSASV
201: SGLDEGAEEV KRPRLLLDGD GVGVDGLLYH HGGNLNMEEA LVPEPSVDMY YAGGDGFGGV QADGGPPYAF HMDSGY
001: MEELKVEMEE ETVTFTGSVA ASSSVGSSSS PRPMEGLNET GPPPFLTKTY EMVEDPATDT VVSWSNGRNS FVVWDSHKFS TTLLPRYFKH SNFSSFIRQL
101: NTYGFRKIDP DRWEFANEGF LAGQKHLLKN IKRRRNMGLQ NVNQQGSGMS CVEVGQYGFD GEVERLKRDH GVLVAEVVRL RQQQHSSKSQ VAAMEQRLLV
201: TEKRQQQMMT FLAKALNNPN FVQQFAVMSK EKKSLFGLDV GRKRRLTSTP SLGTMEENLL HDQEFDRMKD DMEMLFAAAI DDEANNSMPT KEEQCLEAMN
301: VMMRDGNLEA ALDVKVEDLV GSPLDWDSQD LHDMVDQMGF LGSEP
101: NTYGFRKIDP DRWEFANEGF LAGQKHLLKN IKRRRNMGLQ NVNQQGSGMS CVEVGQYGFD GEVERLKRDH GVLVAEVVRL RQQQHSSKSQ VAAMEQRLLV
201: TEKRQQQMMT FLAKALNNPN FVQQFAVMSK EKKSLFGLDV GRKRRLTSTP SLGTMEENLL HDQEFDRMKD DMEMLFAAAI DDEANNSMPT KEEQCLEAMN
301: VMMRDGNLEA ALDVKVEDLV GSPLDWDSQD LHDMVDQMGF LGSEP
Arabidopsis Description
HSFA2Heat stress transcription factor A-2 [Source:UniProtKB/Swiss-Prot;Acc:O80982]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.