Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra027434.1-P | Field mustard | nucleus | 97.5 | 97.5 |
| AT1G55520.1 | Thale cress | nucleus | 93.5 | 93.5 |
| GSMUA_Achr6P23210_001 | Banana | nucleus | 93.5 | 93.5 |
| Solyc01g028930.2.1 | Tomato | nucleus | 93.0 | 91.63 |
| KRH65451 | Soybean | nucleus | 91.5 | 91.5 |
| KRH08285 | Soybean | nucleus | 91.5 | 91.5 |
| EES16412 | Sorghum | nucleus | 91.5 | 91.5 |
| KRH40768 | Soybean | nucleus | 91.0 | 91.0 |
| TraesCS4A01G298000.1 | Wheat | nucleus | 91.0 | 91.0 |
| TraesCS4D01G014000.2 | Wheat | nucleus | 91.0 | 91.0 |
| KRH00416 | Soybean | nucleus | 90.5 | 90.5 |
| TraesCS5A01G022000.1 | Wheat | nucleus | 89.5 | 89.5 |
| TraesCS5D01G027800.3 | Wheat | nucleus | 89.5 | 89.5 |
| Os03t0657000-01 | Rice | nucleus | 90.5 | 89.16 |
| TraesCS5B01G018500.1 | Wheat | nucleus | 89.0 | 88.56 |
| Os12t0580300-01 | Rice | nucleus | 89.5 | 86.06 |
| GSMUA_Achr1P26830_001 | Banana | nucleus | 93.0 | 85.32 |
| VIT_06s0004g00180.t01 | Wine grape | nucleus | 92.0 | 77.31 |
| TraesCS4B01G015700.2 | Wheat | nucleus | 83.5 | 74.55 |
| GSMUA_Achr5P08990_001 | Banana | nucleus | 92.0 | 64.79 |
| CDY23601 | Canola | mitochondrion, nucleus, plastid | 97.5 | 61.32 |
| HORVU4Hr1G002400.5 | Barley | golgi | 91.0 | 54.01 |
| Zm00001d013856_P001 | Maize | nucleus | 40.5 | 51.92 |
Protein Annotations
| MapMan:15.3.5.3.1 | MapMan:15.4.1 | PDB:1QN3 | PDB:1QN4 | PDB:1QN5 | PDB:1QN6 |
| PDB:1QN7 | PDB:1QN8 | PDB:1QN9 | PDB:1QNA | PDB:1QNB | PDB:1QNC |
| PDB:1QNE | PDB:1VOK | PDB:1VOL | PDB:1VTL | PDB:1VTO | Gene3D:3.30.310.10 |
| EntrezGene:820546 | EMBL:AB493611 | ProteinID:AEE75355.1 | EMBL:AF324696 | EMBL:AF327429 | EMBL:AF349523 |
| ArrayExpress:AT3G13445 | EnsemblPlantsGene:AT3G13445 | RefSeq:AT3G13445 | TAIR:AT3G13445 | RefSeq:AT3G13445-TAIR-G | EnsemblPlants:AT3G13445.1 |
| TAIR:AT3G13445.1 | EMBL:AY054608 | EMBL:AY072455 | EMBL:AY084881 | EMBL:AY463625 | Unigene:At.24512 |
| ProteinID:BAB01751.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006352 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| InterPro:IPR012295 | HAMAP:MF_00408 | RefSeq:NP_187953.1 | UniProt:P28147 | PFAM:PF00352 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PRINTS:PR00686 | ScanProsite:PS00351 | PANTHER:PTHR10126 |
| PANTHER:PTHR10126:SF36 | SUPFAM:SSF55945 | InterPro:TBP | Symbol:TBP1 | InterPro:TBP_CS | InterPro:TBP_dom_sf |
| InterPro:TBP_eukaryotic | UniParc:UPI0000000A7E | EMBL:X54996 | : | : | : |
Description
TBP1TATA-box-binding protein 1 [Source:UniProtKB/Swiss-Prot;Acc:P28147]
Coordinates
chr3:+:4379793..4382224
Molecular Weight (calculated)
22369.6 Da
IEP (calculated)
10.210
GRAVY (calculated)
-0.037
Length
200 amino acids
Sequence
(BLAST)
(BLAST)
001: MTDQGLEGSN PVDLSKHPSG IVPTLQNIVS TVNLDCKLDL KAIALQARNA EYNPKRFAAV IMRIREPKTT ALIFASGKMV CTGAKSEDFS KMAARKYARI
101: VQKLGFPAKF KDFKIQNIVG SCDVKFPIRL EGLAYSHAAF SSYEPELFPG LIYRMKVPKI VLLIFVSGKI VITGAKMRDE TYKAFENIYP VLSEFRKIQQ
101: VQKLGFPAKF KDFKIQNIVG SCDVKFPIRL EGLAYSHAAF SSYEPELFPG LIYRMKVPKI VLLIFVSGKI VITGAKMRDE TYKAFENIYP VLSEFRKIQQ
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.