Factsheet for Os10t0432300-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0657000-01	Rice	nucleus	79.37	87.19
Os12t0580300-01	Rice	nucleus	78.92	84.62
EER91582	Sorghum	nucleus	79.82	81.65
TraesCS1A01G139600.1	Wheat	nucleus	83.41	79.83
TraesCS1B01G151700.1	Wheat	nucleus	83.41	79.49
GSMUA_Achr10P...	Banana	nucleus	69.96	75.0
Zm00001d027501_P001	Maize	mitochondrion, nucleus	44.84	69.44
KXG38188	Sorghum	mitochondrion, nucleus	70.85	67.52
HORVU1Hr1G035600.1	Barley	nucleus, plastid	83.41	62.21

Protein Annotations

MapMan:15.3.5.3.1	MapMan:15.4.1	Gene3D:3.30.310.10	EntrezGene:4348699	ProteinID:ABB47667.1	ProteinID:BAF26582.1
ProteinID:BAT10961.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0006139
GO:GO:0006352	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR012295
HAMAP:MF_00408	EnsemblPlantsGene:Os10g0432300	EnsemblPlants:Os10t0432300-01	PFAM:PF00352	PRINTS:PR00686	ScanProsite:PS00351
PANTHER:PTHR10126	PANTHER:PTHR10126:SF36	UniProt:Q337X1	SUPFAM:SSF55945	InterPro:TBP	InterPro:TBP_CS
InterPro:TBP_dom_sf	InterPro:TBP_eukaryotic	UniParc:UPI00005E1EB5	RefSeq:XP_015612909.1	SEG:seg	:

Description

Similar to Transcription factor IID, TFIID (Fragment). (Os10t0432300-01);Non-protein coding transcript. (Os10t0432300-02)

Coordinates

chr10:-:15424832..15427433

Molecular Weight (calculated)

24256.7 Da

IEP (calculated)

10.091

GRAVY (calculated)

-0.033

Length

223 amino acids

Sequence
(BLAST)

001: MAAAAVDPMA LGLGTSGGGG GGESAVGGDG AEPVDLVEHP SGIVPTLQNI VSTVNLDCRL DLKKIALQAR NAEYNPKRFA AVIMRIRDPK TTALIFASGK
101: MVCTGAKSED HSKLAARKYA RIVQKLGFPA KFKDFKIQNI VGSCDVKFPI RLEGLAYSHG AFSSYEPELF PGLIYRMKQP KIVLLIFVSG KIVLTGAKYR
201: KEIYAAFENM FPVLTEYRKT QQR

Best Arabidopsis Sequence Match ( AT1G55520.4 )
(BLAST)

001: MADQGTEGSQ PVDLTKHPSG IVPTLQNIVS TVNLDCKLDL KAIALQARNA EYNPKRFAAV IMRIREPKTT ALIFASGKMV CTGAKSEHLS KLAARKYARI
101: VQKLGFPAKF KDFKIQNIVG SCDVKFPIRL EGLAYSHSAF SSYEPELFPG LIYRMKLPKI VLLIFVSGKI VITGAKMREE TYTAFENIYP VLREFRKVQQ

Arabidopsis Description

TBP2TATA-box-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:P28148]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.