Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G151700.1 | Wheat | nucleus | 100.0 | 99.57 |
| TraesCS4A01G298000.1 | Wheat | nucleus | 75.11 | 87.5 |
| TraesCS5A01G022000.1 | Wheat | nucleus | 75.11 | 87.5 |
| Os10t0432300-01 | Rice | nucleus | 79.83 | 83.41 |
| EER91582 | Sorghum | nucleus | 77.68 | 83.03 |
| GSMUA_Achr10P... | Banana | nucleus | 68.67 | 76.92 |
| HORVU1Hr1G035600.1 | Barley | nucleus, plastid | 98.71 | 76.92 |
| Zm00001d027501_P001 | Maize | mitochondrion, nucleus | 43.78 | 70.83 |
| KXG38188 | Sorghum | mitochondrion, nucleus | 69.1 | 68.8 |
Protein Annotations
| MapMan:15.3.5.3.1 | MapMan:15.4.1 | Gene3D:3.30.310.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006352 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | InterPro:IPR012295 | HAMAP:MF_00408 | PFAM:PF00352 | PRINTS:PR00686 | ScanProsite:PS00351 |
| PANTHER:PTHR10126 | PANTHER:PTHR10126:SF36 | SUPFAM:SSF55945 | InterPro:TBP | InterPro:TBP_CS | InterPro:TBP_dom_sf |
| InterPro:TBP_eukaryotic | EnsemblPlantsGene:TraesCS1A01G139600 | EnsemblPlants:TraesCS1A01G139600.1 | TIGR:cd04516 | SEG:seg | : |
Description
No Description!
Coordinates
chr1A:-:237327926..237329898
Molecular Weight (calculated)
24945.6 Da
IEP (calculated)
10.138
GRAVY (calculated)
0.110
Length
233 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAAAVDPMV LGLGTSGGAS GSGVVGGGVG RAGGGGAVME GAQPVDLARH PSGIVPVLQN IVSTVNLDCR LDLKQIALQA RNAEYNPKRF AAVIMRIRDP
101: KTTALIFASG KMVCTGAKSE EHSKLAARKY ARIVQKLGFP ATFKDFKIQN IVASCDVKFP IRLEGLAYSH GAFSSYEPEL FPGLIYRMKQ PKIVLLVFVS
201: GKIVLTGAKV RDEIYAAFEN IYPVLTEYRK SQQ
101: KTTALIFASG KMVCTGAKSE EHSKLAARKY ARIVQKLGFP ATFKDFKIQN IVASCDVKFP IRLEGLAYSH GAFSSYEPEL FPGLIYRMKQ PKIVLLVFVS
201: GKIVLTGAKV RDEIYAAFEN IYPVLTEYRK SQQ
001: MADQGTEGSQ PVDLTKHPSG IVPTLQNIVS TVNLDCKLDL KAIALQARNA EYNPKRFAAV IMRIREPKTT ALIFASGKMV CTGAKSEHLS KLAARKYARI
101: VQKLGFPAKF KDFKIQNIVG SCDVKFPIRL EGLAYSHSAF SSYEPELFPG LIYRMKLPKI VLLIFVSGKI VITGAKMREE TYTAFENIYP VLREFRKVQQ
101: VQKLGFPAKF KDFKIQNIVG SCDVKFPIRL EGLAYSHSAF SSYEPELFPG LIYRMKLPKI VLLIFVSGKI VITGAKMREE TYTAFENIYP VLREFRKVQQ
Arabidopsis Description
TBP2TATA-box-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:P28148]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.