CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 3
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES16412	Sorghum	nucleus	66.67	78.0
Zm00001d027501_P001	Maize	mitochondrion, nucleus	47.86	77.78
OQU91240	Sorghum	nucleus	59.4	77.65
EER91582	Sorghum	nucleus	70.94	76.15
Os10t0432300-01	Rice	nucleus	67.52	70.85
TraesCS1A01G139600.1	Wheat	nucleus	68.8	69.1
TraesCS1B01G151700.1	Wheat	nucleus	68.8	68.8
GSMUA_Achr10P...	Banana	nucleus	60.68	68.27
HORVU1Hr1G035600.1	Barley	nucleus, plastid	68.8	53.85

Protein Annotations

MapMan:15.3.5.3.1	MapMan:15.4.1	Gene3D:3.30.310.10	UniProt:A0A1B6QJU3	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0006139	GO:GO:0006352	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR012295	EnsemblPlants:KXG38188	ProteinID:KXG38188	ProteinID:KXG38188.1
HAMAP:MF_00408	PFAM:PF00352	PRINTS:PR00686	ScanProsite:PS00351	PANTHER:PTHR10126	PANTHER:PTHR10126:SF36
EnsemblPlantsGene:SORBI_3001G194800	SUPFAM:SSF55945	InterPro:TBP	InterPro:TBP_CS	InterPro:TBP_dom_sf	InterPro:TBP_eukaryotic
UniParc:UPI0003C6A130	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:17455702..17458407

Molecular Weight (calculated)

25253.9 Da

IEP (calculated)

10.587

GRAVY (calculated)

0.016

Length

234 amino acids

Sequence
(BLAST)

001: MASAAGAGPM GLGLRSGSGA WGGGGGGQAA APAMNDAHQP GVDLARHPSG FVPTLQNIVS TVNLGCKLDL QQIASGARNA EYNPKRFAAV IVRIRDPKTT
101: ALVFASGKMV CTGAKSEEHS RLAGRKFARI VHKLGFQSAR FKDFKIQNIV GSCDVKFPIR LEGLALASGT FANYEPEIFP GLIYRMVEPK IVILIFVSGK
201: IVLTGAKVRE EIYTAFENIY PMLVQFRKRQ QYIR

Best Arabidopsis Sequence Match ( AT1G55520.4 )
(BLAST)

001: MADQGTEGSQ PVDLTKHPSG IVPTLQNIVS TVNLDCKLDL KAIALQARNA EYNPKRFAAV IMRIREPKTT ALIFASGKMV CTGAKSEHLS KLAARKYARI
101: VQKLGFPAKF KDFKIQNIVG SCDVKFPIRL EGLAYSHSAF SSYEPELFPG LIYRMKLPKI VLLIFVSGKI VITGAKMREE TYTAFENIYP VLREFRKVQQ

Arabidopsis Description

TBP2TATA-box-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:P28148]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.