CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	plastid
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES16412	Sorghum	nucleus	92.18	82.5
HORVU5Hr1G006000.6	Barley	cytosol, extracellular, nucleus	91.62	81.19
EER91582	Sorghum	nucleus	86.03	70.64
KXG38188	Sorghum	mitochondrion, nucleus	77.65	59.4

Protein Annotations

MapMan:15.3.5.3.1	MapMan:15.4.1	Gene3D:3.30.310.10	UniProt:A0A1Z5S5N3	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0006139	GO:GO:0006352	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR012295	HAMAP:MF_00408	EnsemblPlants:OQU91240	ProteinID:OQU91240
ProteinID:OQU91240.1	PFAM:PF00352	PRINTS:PR00686	ScanProsite:PS00351	PANTHER:PTHR10126	PANTHER:PTHR10126:SF36
EnsemblPlantsGene:SORBI_3001G148101	SUPFAM:SSF55945	InterPro:TBP	InterPro:TBP_CS	InterPro:TBP_dom_sf	InterPro:TBP_eukaryotic
UniParc:UPI000B8BA1EA	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:11932099..11934423

Molecular Weight (calculated)

20156.1 Da

IEP (calculated)

10.366

GRAVY (calculated)

0.083

Length

179 amino acids

Sequence
(BLAST)

001: MVCLTNIVST VNLDCKLDLK AIALQARNAE YNPKRFAAVI MRIREPKTTA LIFASGKMVC TGAKSEQQSK LAARKKLGFP AKFKDFKIQN IVGSCDVKFP
101: IRLEGLAYSH GAFSSYEPEL FPGLIYRMKQ PKIVLLIFVS GKIVLTGAKV REETYTAFEN IYPVLTEFRK MTQVKVTFF

Best Arabidopsis Sequence Match ( AT1G55520.4 )
(BLAST)

001: MADQGTEGSQ PVDLTKHPSG IVPTLQNIVS TVNLDCKLDL KAIALQARNA EYNPKRFAAV IMRIREPKTT ALIFASGKMV CTGAKSEHLS KLAARKYARI
101: VQKLGFPAKF KDFKIQNIVG SCDVKFPIRL EGLAYSHSAF SSYEPELFPG LIYRMKLPKI VLLIFVSGKI VITGAKMREE TYTAFENIYP VLREFRKVQQ

Arabidopsis Description

TBP2TATA-box-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:P28148]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.