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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular, nucleus, cytosol

Predictor Summary:
  • plastid 2
  • nucleus 3
  • cytosol 1
  • extracellular 2
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, extracellular, nucleus
Any Predictor:cytosol, nucleus, plastid, secretory
BaCelLo:plastid
EpiLoc:nucleus
iPSORT:plastid
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:secretory
WoLF PSORT:nucleus
YLoc:extracellular
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
OQU91240 Sorghum nucleus 81.19 91.62
HORVU1Hr1G035600.1 Barley nucleus, plastid 81.19 54.85
HORVU4Hr1G002400.5 Barley golgi 87.13 52.23
Protein Annotations
MapMan:15.3.5.3.1MapMan:15.4.1Gene3D:3.30.310.10GO:GO:0003674GO:GO:0003676GO:GO:0003677
GO:GO:0005488GO:GO:0006139GO:GO:0006352GO:GO:0008150GO:GO:0008152GO:GO:0009058
GO:GO:0009987EnsemblPlantsGene:HORVU5Hr1G006000EnsemblPlants:HORVU5Hr1G006000.6InterPro:IPR012295UniProt:M0VUG5HAMAP:MF_00408
PFAM:PF00352PRINTS:PR00686ScanProsite:PS00351PANTHER:PTHR10126PANTHER:PTHR10126:SF36SUPFAM:SSF55945
InterPro:TBPInterPro:TBP_CSInterPro:TBP_dom_sfInterPro:TBP_eukaryoticUniParc:UPI000295D44F:
Description
No Description!
Coordinates
chrchr5H:-:9866273..9869664
Molecular Weight (calculated)
22876.2 Da
IEP (calculated)
10.267
GRAVY (calculated)
0.025
Length
202 amino acids
Sequence
(BLAST)
001: MWPLFLPQVP NFNAAGCTLL SFVWSDDRNI VSTVNLDCKL DLKAIALQAR NAEYNPKRFA AVIMRIREPK TTALIFASGK MVCTGAKSEQ QSKLAARKYA
101: RIIQKLGFPA KFKDFKIQNI VASCDVKFPI RLEGLAYSHG AFSSYEPELF PGLIYRMRQP KIVLLIFVSG KIVLTGAKVR EETYTAFENI YPVLTEFRKV
201: QQ
Best Arabidopsis Sequence Match ( AT1G55520.1 )
(BLAST)
001: MADQGTEGSQ PVDLTKHPSG IVPTLQNIVS TVNLDCKLDL KAIALQARNA EYNPKRFAAV IMRIREPKTT ALIFASGKMV CTGAKSEHLS KLAARKYARI
101: VQKLGFPAKF KDFKIQNIVG SCDVKFPIRL EGLAYSHSAF SSYEPELFPG LIYRMKLPKI VLLIFVSGKI VITGAKMREE TYTAFENIYP VLREFRKVQQ
Arabidopsis Description
TBP2TATA-box-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:P28148]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.