Factsheet for TraesCS5B01G298000.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, unclear, nucleus

Predictor Summary:

extracellular 4
endoplasmic reticulum 7
vacuole 4
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, nucleus, unclear
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	endoplasmic reticulum

unclear: 25769308
nucleus: 26579155

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 26579155 doi

T Bonnot, E Bancel, C Chambon, J Boudet, G Branlard, P Martre

Metabolism Exploration Platform Proteomic Component, Institut National de la Recherche Agronomique Saint-Genès Champanelle, France., UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Institut National de la Recherche Agronomique Clermont-Ferrand, France ; UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Blaise Pascal University Aubière, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G305500.1	Wheat	endoplasmic reticulum	89.07	97.86
TraesCS5A01G298700.1	Wheat	endoplasmic reticulum	95.21	96.36
HORVU5Hr1G078400.1	Barley	plasma membrane	94.76	94.34
TraesCS7B01G330900.1	Wheat	endoplasmic reticulum	91.47	91.74
TraesCS7B01G331400.1	Wheat	endoplasmic reticulum	90.27	91.36
EES01866	Sorghum	endoplasmic reticulum	81.29	81.41
Os05t0428600-01	Rice	extracellular, plasma membrane	82.48	80.2
TraesCS6B01G058300.1	Wheat	endoplasmic reticulum	76.2	76.54
Os05t0367800-00	Rice	plasma membrane	73.05	72.94
Os08t0197700-00	Rice	plasma membrane	82.78	72.38
TraesCS1B01G294300.1	Wheat	cytosol, golgi, unclear	58.23	60.03
TraesCS5B01G492500.1	Wheat	cytosol	58.23	60.03
TraesCS6B01G367800.1	Wheat	golgi, plastid	58.08	59.97
TraesCS5B01G087700.4	Wheat	cytosol	58.08	59.97
TraesCS2B01G374700.1	Wheat	cytosol	57.93	59.81
TraesCS4B01G206700.1	Wheat	cytosol	58.23	59.75
TraesCS4B01G205700.1	Wheat	cytosol, golgi	58.23	59.21
TraesCS3B01G390700.1	Wheat	cytosol	57.78	59.2
TraesCS5B01G129700.2	Wheat	cytosol	54.94	59.1
TraesCS3B01G390800.1	Wheat	cytosol	54.79	59.03
TraesCS4B01G142400.1	Wheat	cytosol	57.48	57.4
TraesCS6B01G374500.1	Wheat	cytosol	38.02	54.86
TraesCS6B01G374400.1	Wheat	cytosol	45.21	54.71
TraesCS6B01G374600.1	Wheat	cytosol	41.02	53.52
TraesCS4B01G206400.1	Wheat	cytosol	46.56	52.89
TraesCS2B01G125400.1	Wheat	vacuole	50.75	51.29
TraesCS2B01G535000.2	Wheat	cytosol	39.97	50.0
TraesCS3B01G296300.1	Wheat	cytosol	36.38	47.18
TraesCS4B01G206300.1	Wheat	cytosol	44.46	46.55
TraesCS4B01G397600.1	Wheat	mitochondrion	45.21	44.61
TraesCS3B01G331400.4	Wheat	mitochondrion	45.06	44.01
TraesCS1B01G151300.1	Wheat	plastid	44.76	43.59
TraesCS5B01G111200.1	Wheat	golgi, plastid	44.16	42.75
TraesCS5B01G267900.1	Wheat	peroxisome	45.06	37.39

Protein Annotations

Gene3D:1.20.1270.10	Gene3D:2.60.34.10	Gene3D:3.30.420.40	Gene3D:3.90.640.10	MapMan:35.1	ncoils:Coil
InterPro:HSP70_C_sf	InterPro:HSP70_peptide-bd_sf	InterPro:Heat_shock_70_CS	InterPro:Hsp_70_fam	InterPro:IPR029047	InterPro:IPR029048
PFAM:PF00012	PRINTS:PR00301	ScanProsite:PS00297	ScanProsite:PS00329	ScanProsite:PS01036	PANTHER:PTHR19375
PANTHER:PTHR19375:SF317	SUPFAM:SSF100920	SUPFAM:SSF100934	SUPFAM:SSF53067	SignalP:SignalP-noTM	TMHMM:TMhelix
EnsemblPlantsGene:TraesCS5B01G298000	EnsemblPlants:TraesCS5B01G298000.1	TIGR:cd10241	SEG:seg	:	:

Description

No Description!

Coordinates

chr5B:-:480301686..480304042

Molecular Weight (calculated)

73505.3 Da

IEP (calculated)

4.808

GRAVY (calculated)

-0.402

Length

668 amino acids

Sequence
(BLAST)

001: MSSTYNLVMA RAPMWMFAML VAALLLVTPA ASAAPTGGDT GTVIGIDLGT TYSCVGVYRN GRVEIIANDQ GNRITPSWVA FADGGERLIG EAAKNQAAAN
101: PERTIYDTKR LIGRDFDDAV VQRDIKLLAY SVVDRKGKPH IQVRVKDGDV RVFSPEEVSA MVLSKMKETA EAYLGEKVTH AVVTVPAYFN DAQRQATKDA
201: GVIAGLNVLR IVNEPTAAAI AYGIDEKGPE KNVLVFDLGG GTFDVSVLSI DNGVFEVLAT NGDTHLGGED FDQRLMDYFI KLIKRKHGRD ISGDLRALGK
301: LRRECERAKR ALSNQHQVRV EIESLFDGVD FSEPLSRARF EELNSDLFRK TMVPVKKAMA DAGLSKADID EIVLVGGSTR IPKVQQLLKD YFNGKEPNKG
401: VNPDEAVAYG AAVQASIVSG HVDENTKKMI LIDVAPLTLG LETVGGVMTK LIPRNTVVPT KKTQVFTTYQ DKQTTVSIKV YEGERSMTKD NRLLGKFDLS
501: GIPPAPRGAP QIEVTFEVDV NGILHVKAAD KGTGKSEKIT ITNEGGRHSQ EEIDRMVREA EEFMEEDRKV KERVDARNKL ETYVYDIKNT LDGKMADAME
601: GDEKEKVQDA VREVNEWLDD NPEAEKEDYD EKLRELEDVC NPVISALYQR SGGAPDDNNT GEDDHDEL

Best Arabidopsis Sequence Match ( AT5G42020.1 )
(BLAST)

001: MARSFGANST VVLAIIFFGC LFAFSTAKEE ATKLGSVIGI DLGTTYSCVG VYKNGHVEII ANDQGNRITP SWVGFTDSER LIGEAAKNQA AVNPERTVFD
101: VKRLIGRKFE DKEVQKDRKL VPYQIVNKDG KPYIQVKIKD GETKVFSPEE ISAMILTKMK ETAEAYLGKK IKDAVVTVPA YFNDAQRQAT KDAGVIAGLN
201: VARIINEPTA AAIAYGLDKK GGEKNILVFD LGGGTFDVSV LTIDNGVFEV LSTNGDTHLG GEDFDHRIME YFIKLIKKKH QKDISKDNKA LGKLRRECER
301: AKRALSSQHQ VRVEIESLFD GVDLSEPLTR ARFEELNNDL FRKTMGPVKK AMDDAGLQKS QIDEIVLVGG STRIPKVQQL LKDFFEGKEP NKGVNPDEAV
401: AYGAAVQGGI LSGEGGDETK DILLLDVAPL TLGIETVGGV MTKLIPRNTV IPTKKSQVFT TYQDQQTTVS IQVFEGERSL TKDCRLLGKF DLTGVPPAPR
501: GTPQIEVTFE VDANGILNVK AEDKASGKSE KITITNEKGR LSQEEIDRMV KEAEEFAEED KKVKEKIDAR NALETYVYNM KNQVSDKDKL ADKLEGDEKE
601: KIEAATKEAL EWLDENQNSE KEEYDEKLKE VEAVCNPIIT AVYQRSGGAP GAGGESSTEE EDESHDEL

Arabidopsis Description

BIPHeat shock protein 70 (Hsp 70) family protein [Source:TAIR;Acc:AT5G42020]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.