Factsheet for TraesCS5D01G305500.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 4
golgi 4
plasma membrane 4
endoplasmic reticulum 6
vacuole 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G298700.1	Wheat	endoplasmic reticulum	97.53	89.85
TraesCS5B01G298000.1	Wheat	endoplasmic reticulum, nucleus, unclear	97.86	89.07
HORVU5Hr1G078400.1	Barley	plasma membrane	96.55	87.48
TraesCS7D01G423100.1	Wheat	endoplasmic reticulum	93.75	86.36
EES01866	Sorghum	endoplasmic reticulum	82.4	75.11
Os05t0428600-01	Rice	extracellular, plasma membrane	83.72	74.09
TraesCS6D01G049100.1	Wheat	golgi	77.8	71.13
TraesCS2D01G600900.1	Wheat	endoplasmic reticulum	75.66	68.86
Os05t0367800-00	Rice	plasma membrane	74.67	67.86
Os08t0197700-00	Rice	plasma membrane	83.88	66.75
TraesCS1D01G452500.1	Wheat	cytosol	56.25	65.9
TraesCS5D01G492900.2	Wheat	cytosol	61.02	57.25
TraesCS5D01G093900.1	Wheat	cytosol, mitochondrion, nucleus	60.86	57.19
TraesCS1D01G284000.2	Wheat	cytosol, golgi	60.86	57.1
TraesCS6D01G317700.1	Wheat	cytosol	60.69	57.03
TraesCS3D01G352400.2	Wheat	cytosol, golgi	60.2	56.57
TraesCS4D01G206600.1	Wheat	cytosol	60.69	56.16
TraesCS3D01G351900.1	Wheat	cytosol	60.2	56.13
TraesCS4D01G207500.1	Wheat	cytosol	60.03	56.07
TraesCS4D01G140800.1	Wheat	cytosol, nucleus	59.7	56.02
TraesCS6D01G402500.1	Wheat	cytosol	47.04	55.21
TraesCS4D01G207100.1	Wheat	cytosol	43.09	53.8
TraesCS6D01G322700.1	Wheat	cytosol	39.64	53.67
TraesCS6D01G322800.1	Wheat	cytosol	44.9	53.22
TraesCS6D01G339700.1	Wheat	cytosol	48.36	48.92
TraesCS2D01G575200.1	Wheat	mitochondrion, plastid	48.03	43.26
TraesCS5D01G276100.1	Wheat	mitochondrion	48.52	43.13
TraesCS3D01G296700.1	Wheat	golgi	48.36	43.05
TraesCS3D01G262800.1	Wheat	cytosol	42.76	42.35
TraesCS1D01G131800.1	Wheat	plastid	47.37	42.23
TraesCS5D01G117600.1	Wheat	plastid	46.71	41.16
TraesCS6D01G339800.1	Wheat	nucleus	45.07	34.55
TraesCS6D01G339600.1	Wheat	cytosol	51.64	33.84

Protein Annotations

Gene3D:2.60.34.10	Gene3D:3.30.420.40	Gene3D:3.90.640.10	MapMan:35.1	InterPro:HSP70_C_sf	InterPro:HSP70_peptide-bd_sf
InterPro:Heat_shock_70_CS	InterPro:Hsp_70_fam	InterPro:IPR029047	InterPro:IPR029048	PFAM:PF00012	PRINTS:PR00301
ScanProsite:PS00297	ScanProsite:PS00329	ScanProsite:PS01036	PANTHER:PTHR19375	PANTHER:PTHR19375:SF317	SUPFAM:SSF100920
SUPFAM:SSF100934	SUPFAM:SSF53067	SignalP:SignalP-noTM	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS5D01G305500	EnsemblPlants:TraesCS5D01G305500.1
TIGR:cd10241	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr5D:-:400295411..400297237

Molecular Weight (calculated)

66685.9 Da

IEP (calculated)

5.662

GRAVY (calculated)

-0.325

Length

608 amino acids

Sequence
(BLAST)

001: MARAPMWMFA TLVAALLLVM PAASAAPTGG DTGTVIGIDL GTTYSCVGVY RNGRVEIIAN EQGNRITPSW VTFADGGERL IGEAAKNQAA ANPERTIYDA
101: KRLIGRDFAD AVVQRDIKLL PYSVVDRKGK PHIQVRVKDG DVRVFSPEEV SAMVLAKMKE TAEAYLGEKV THAVVTVPAY FNDAQRQATK DAGVIAGLNV
201: LRIVNEPTAA AIAYGIDEKG PEKNVLVFDL GGGTFDVSVL SIDNGVFEVL ATNGDTHLGG EDFDQRLMDY FMKLIKRKHG RDISGDLRAL GKLRRECERA
301: KRALSNQHQV RVEIESLFDG VDFSEPLTRA RFEELNNDLF RKTMVPVKKA MADAGLSKAD IDEIVLVGGS TRIPKVQQLL KDYFNGKEPN KGVNPDEAVA
401: YGAAVQASIV SGHVDENTKK MILIDVAPLT LGLETVGGVM TKLIPRNTVV PTKKTQVFTT YQDKQTTVSI KVYEGERSMT KDNRLLGKFD LSGIPPAPRG
501: APQIEVTFEV DVNGILHVKA ADKGTGKSEK ITITNEGGRH SQEEIDRMVR EAEEFMEEDR KVKERVDARN KLEAYVYDIK NTLDGKMADA MEGDDKEKVQ
601: DAVREVNE

Best Arabidopsis Sequence Match ( AT1G09080.1 )
(BLAST)

001: MIFIKENTAK MTRNKAIACL VFLTVLDFLM NIGAALMSSL AIEGEEQKLG TVIGIDLGTT YSCVGVYHNK HVEIIANDQG NRITPSWVAF TDTERLIGEA
101: AKNQAAKNPE RTIFDPKRLI GRKFDDPDVQ RDIKFLPYKV VNKDGKPYIQ VKVKGEEKLF SPEEISAMIL TKMKETAEAF LGKKIKDAVI TVPAYFNDAQ
201: RQATKDAGAI AGLNVVRIIN EPTGAAIAYG LDKKGGESNI LVYDLGGGTF DVSILTIDNG VFEVLSTSGD THLGGEDFDH RVMDYFIKLV KKKYNKDISK
301: DHKALGKLRR ECELAKRSLS NQHQVRVEIE SLFDGVDFSE PLTRARFEEL NMDLFKKTME PVKKALKDAG LKKSDIDEIV LVGGSTRIPK VQQMLKDFFD
401: GKEPSKGTNP DEAVAYGAAV QGGVLSGEGG EETQNILLLD VAPLSLGIET VGGVMTNIIP RNTVIPTKKS QVFTTYQDQQ TTVTINVYEG ERSMTKDNRE
501: LGKFDLTGIL PAPRGVPQIE VTFEVDANGI LQVKAEDKVA KTSQSITITN DKGRLTEEEI EEMIREAEEF AEEDKIMKEK IDARNKLETY VYNMKSTVAD
601: KEKLAKKISD EDKEKMEGVL KEALEWLEEN VNAEKEDYDE KLKEVELVCD PVIKSVYEKT EGENEDDDGD DHDEL

Arabidopsis Description

MED37BProbable mediator of RNA polymerase II transcription subunit 37b [Source:UniProtKB/Swiss-Prot;Acc:Q8H1B3]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.