Factsheet for TraesCS2D01G600900.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 4
endoplasmic reticulum 7
vacuole 4
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G585600.1	Wheat	endoplasmic reticulum	97.31	97.45
HORVU2Hr1G122760.1	Barley	endoplasmic reticulum	96.11	96.25
TraesCS1D01G452500.1	Wheat	cytosol	73.8	94.99
HORVU2Hr1G122800.1	Barley	extracellular, golgi	91.32	92.14
TraesCS5D01G305500.1	Wheat	endoplasmic reticulum	68.86	75.66
TraesCS7D01G423100.1	Wheat	endoplasmic reticulum	74.25	75.15
TraesCS6D01G049100.1	Wheat	golgi	68.86	69.17
TraesCS1D01G284000.2	Wheat	cytosol, golgi	56.14	57.87
TraesCS3D01G352400.2	Wheat	cytosol, golgi	55.84	57.65
TraesCS3D01G351900.1	Wheat	cytosol	55.84	57.21
TraesCS5D01G093900.1	Wheat	cytosol, mitochondrion, nucleus	55.09	56.88
TraesCS6D01G317700.1	Wheat	cytosol	55.09	56.88
TraesCS5D01G492900.2	Wheat	cytosol	55.09	56.79
TraesCS4D01G140800.1	Wheat	cytosol, nucleus	54.94	56.64
TraesCS4D01G206600.1	Wheat	cytosol	55.69	56.62
TraesCS4D01G207500.1	Wheat	cytosol	54.79	56.22
TraesCS6D01G322700.1	Wheat	cytosol	37.72	56.12
TraesCS4D01G207100.1	Wheat	cytosol	39.22	53.8
TraesCS6D01G402500.1	Wheat	cytosol	41.62	53.67
TraesCS6D01G322800.1	Wheat	cytosol	40.72	53.02
TraesCS6D01G339700.1	Wheat	cytosol	43.56	48.42
TraesCS2D01G575200.1	Wheat	mitochondrion, plastid	44.46	44.0
TraesCS5D01G276100.1	Wheat	mitochondrion	44.61	43.57
TraesCS3D01G296700.1	Wheat	golgi	44.31	43.34
TraesCS3D01G262800.1	Wheat	cytosol	39.67	43.16
TraesCS1D01G131800.1	Wheat	plastid	42.66	41.79
TraesCS5D01G117600.1	Wheat	plastid	43.11	41.74
TraesCS6D01G339800.1	Wheat	nucleus	41.17	34.68
TraesCS6D01G339600.1	Wheat	cytosol	45.21	32.54

Protein Annotations

Gene3D:1.20.1270.10	Gene3D:2.60.34.10	Gene3D:3.30.420.40	Gene3D:3.90.640.10	MapMan:35.1	ncoils:Coil
InterPro:HSP70_C_sf	InterPro:HSP70_peptide-bd_sf	InterPro:Heat_shock_70_CS	InterPro:Hsp_70_fam	InterPro:IPR029047	InterPro:IPR029048
PFAM:PF00012	PRINTS:PR00301	ScanProsite:PS00297	ScanProsite:PS00329	ScanProsite:PS01036	PANTHER:PTHR19375
PANTHER:PTHR19375:SF317	SUPFAM:SSF100920	SUPFAM:SSF100934	SUPFAM:SSF53067	SignalP:SignalP-noTM	TMHMM:TMhelix
EnsemblPlantsGene:TraesCS2D01G600900	EnsemblPlants:TraesCS2D01G600900.1	TIGR:cd10241	SEG:seg	:	:

Description

No Description!

Coordinates

chr2D:+:651417290..651419296

Molecular Weight (calculated)

71911.2 Da

IEP (calculated)

4.783

GRAVY (calculated)

-0.319

Length

668 amino acids

Sequence
(BLAST)

001: MARATTLLLG LLLAVLLLAA TPAPSAAAAA KEKEKGSGSG NGGPVIGIDL GTTYSCVAVY RNGRVEIIAN DQGNRITPSW VAFTDSGERL IGEAAKNQAA
101: ANPLRTVYDA KRLIGRQFVD AEVQRDMKLL PFKVVDKNGK PHVEVEVKAG DVRTLSPEEV SAMVLTRMKE TAEAYLGEKV RDAVITIPAY FNDAQRQATK
201: DAGAIAGLNV VRLINEPTAA AIAYGLDKVA DGKERNVLVF DLGGGTFDVS VLALDGGVFE VLATNGDTHL GGEDFDQRVM DHFIRLVKRK HGVDISGDAR
301: ALGKLRRECE RAKRALSTQL QVRVEVESLA DGVDLSEPLT RARFEELNAD LFRKVMAPVK KAMADAGLAK GDVDEVVLVG GSTRIPKVQQ LLRDYFGGKE
401: PHKGVNPDEA VAYGAAVQGG IVRGDAKEVV VLDVTPLTLG IETAGGVMAS VIPRNTPIPT KRAKMFTTYE DRQTTVTITV FEGERSMTKD NRLLGKFDLT
501: GIAPAPRGTP QIEVTLEVDV NGILHVGAAD KGTGRSEKIE ISSAGRSISQ EEIERMVQEA EEFAEEDRKV RDRVDARNKL EAYVYSARTT ADGELGDKMD
601: SGDREKVREA AREASEWLEA NPEADKDDYA EKLKELEDVC SPAFAAAYGN AGGGHDDAAE EDNDHDEL

Best Arabidopsis Sequence Match ( AT1G09080.1 )
(BLAST)

001: MIFIKENTAK MTRNKAIACL VFLTVLDFLM NIGAALMSSL AIEGEEQKLG TVIGIDLGTT YSCVGVYHNK HVEIIANDQG NRITPSWVAF TDTERLIGEA
101: AKNQAAKNPE RTIFDPKRLI GRKFDDPDVQ RDIKFLPYKV VNKDGKPYIQ VKVKGEEKLF SPEEISAMIL TKMKETAEAF LGKKIKDAVI TVPAYFNDAQ
201: RQATKDAGAI AGLNVVRIIN EPTGAAIAYG LDKKGGESNI LVYDLGGGTF DVSILTIDNG VFEVLSTSGD THLGGEDFDH RVMDYFIKLV KKKYNKDISK
301: DHKALGKLRR ECELAKRSLS NQHQVRVEIE SLFDGVDFSE PLTRARFEEL NMDLFKKTME PVKKALKDAG LKKSDIDEIV LVGGSTRIPK VQQMLKDFFD
401: GKEPSKGTNP DEAVAYGAAV QGGVLSGEGG EETQNILLLD VAPLSLGIET VGGVMTNIIP RNTVIPTKKS QVFTTYQDQQ TTVTINVYEG ERSMTKDNRE
501: LGKFDLTGIL PAPRGVPQIE VTFEVDANGI LQVKAEDKVA KTSQSITITN DKGRLTEEEI EEMIREAEEF AEEDKIMKEK IDARNKLETY VYNMKSTVAD
601: KEKLAKKISD EDKEKMEGVL KEALEWLEEN VNAEKEDYDE KLKEVELVCD PVIKSVYEKT EGENEDDDGD DHDEL

Arabidopsis Description

MED37BProbable mediator of RNA polymerase II transcription subunit 37b [Source:UniProtKB/Swiss-Prot;Acc:Q8H1B3]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.