Factsheet for TraesCS5D01G093900.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, nucleus
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

mitochondrion: 26136264
nucleus: 26579155

msms PMID: 26136264 doi

S Wang, G Zhang, Y Zhang, Q Song, Z Chen, J Wang, J Guo, N Niu, J Wang, S Ma

College of Agronomy, Northwest A&F University, National Yangling Agricultural Biotechnology & Breeding Center, Yangling Branch of State Wheat Improvement Centre, Wheat Breeding Engineering Research Center, Ministry of Education, Key Laboratory of Crop Heterosis of Shaanxi Province, Yangling, Shaanxi 712100, P. R. China zhanggaisheng18@sohu.com., College of Agronomy, Northwest A&F University, National Yangling Agricultural Biotechnology & Breeding Center, Yangling Branch of State Wheat Improvement Centre, Wheat Breeding Engineering Research Center, Ministry of Education, Key Laboratory of Crop Heterosis of Shaanxi Province, Yangling, Shaanxi 712100, P. R. China., Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, P. R. China.

msms PMID: 26579155 doi

T Bonnot, E Bancel, C Chambon, J Boudet, G Branlard, P Martre

Metabolism Exploration Platform Proteomic Component, Institut National de la Recherche Agronomique Saint-Genès Champanelle, France., UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Institut National de la Recherche Agronomique Clermont-Ferrand, France ; UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Blaise Pascal University Aubière, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G087700.4	Wheat	cytosol	99.85	99.85
HORVU5Hr1G021300.3	Barley	cytosol	99.85	99.85
HORVU5Hr1G021310.1	Barley	cytosol	62.44	99.75
TraesCS5A01G078000.1	Wheat	cytosol, nucleus	99.69	99.69
TraesCS6D01G317700.1	Wheat	cytosol	99.54	99.54
TraesCS4D01G140800.1	Wheat	cytosol, nucleus	93.97	93.83
TraesCS5D01G492900.2	Wheat	cytosol	93.04	92.9
TraesCS1D01G284000.2	Wheat	cytosol, golgi	91.5	91.36
TraesCS4D01G207500.1	Wheat	cytosol	91.81	91.24
TraesCS3D01G352400.2	Wheat	cytosol, golgi	91.19	91.19
TraesCS3D01G351900.1	Wheat	cytosol	91.81	91.1
TraesCS5B01G129700.2	Wheat	cytosol	84.85	88.41
TraesCS4D01G206600.1	Wheat	cytosol	89.34	87.98
TraesCS6D01G402500.1	Wheat	cytosol	58.89	73.55
TraesCS6D01G322700.1	Wheat	cytosol	48.22	69.49
TraesCS4D01G207100.1	Wheat	cytosol	51.78	68.79
TraesCS6D01G322800.1	Wheat	cytosol	51.78	65.3
TraesCS5D01G305500.1	Wheat	endoplasmic reticulum	57.19	60.86
TraesCS6D01G049100.1	Wheat	golgi	62.44	60.75
TraesCS7D01G423100.1	Wheat	endoplasmic reticulum	60.12	58.94
TraesCS6D01G339700.1	Wheat	cytosol	54.4	58.57
TraesCS2D01G600900.1	Wheat	endoplasmic reticulum	56.88	55.09
TraesCS1D01G452500.1	Wheat	cytosol	44.05	54.91
TraesCS3D01G262800.1	Wheat	cytosol	49.77	52.44
TraesCS2D01G575200.1	Wheat	mitochondrion, plastid	47.14	45.19
TraesCS1D01G131800.1	Wheat	plastid	47.3	44.87
TraesCS3D01G296700.1	Wheat	golgi	47.14	44.66
TraesCS5D01G276100.1	Wheat	mitochondrion	46.37	43.86
TraesCS5D01G117600.1	Wheat	plastid	46.21	43.33
TraesCS6D01G339800.1	Wheat	nucleus	50.23	40.98
TraesCS6D01G339600.1	Wheat	cytosol	56.57	39.44

Protein Annotations

Gene3D:1.20.1270.10	MapMan:19.1.5.1	Gene3D:2.60.34.10	Gene3D:3.30.30.30	Gene3D:3.30.420.40	Gene3D:3.90.640.10
ncoils:Coil	InterPro:HSP70_C_sf	InterPro:HSP70_peptide-bd_sf	InterPro:Heat_shock_70_CS	InterPro:Hsp_70_fam	InterPro:IPR029047
InterPro:IPR029048	PFAM:PF00012	PRINTS:PR00301	ScanProsite:PS00297	ScanProsite:PS00329	ScanProsite:PS01036
PANTHER:PTHR19375	PANTHER:PTHR19375:SF308	SUPFAM:SSF100920	SUPFAM:SSF100934	SUPFAM:SSF53067	EnsemblPlantsGene:TraesCS5D01G093900
EnsemblPlants:TraesCS5D01G093900.1	TIGR:cd10233	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr5D:-:103213394..103216909

Molecular Weight (calculated)

71111.5 Da

IEP (calculated)

4.803

GRAVY (calculated)

-0.413

Length

647 amino acids

Sequence
(BLAST)

001: MAAKGDGPAI GIDLGTTYSC VGVWQHDRVE IIANDQGNRT TPSYVAFTDS ERLIGDAAKN QVAMNPINTV FDAKRLIGRR FTDSTVQSDI KLWPFKVVAG
101: PGDKPMINVQ YKGEEKQFAA EEISSMVLIK MREIAEAFLG STVKNAVVTV PAYFNDSQRQ ATKDAGVIAG INVLRIINEP TAAAIAYGLD KKASSVGEKN
201: VLIFDLGGGT FDVSLLTIEE GIFEVKATAG DTHLGGEDFD NRMVNHFVQE FKRKNKKDIS GNPRALRRLR TSCERAKRTL SSTAQTTIEI DSLFEGIDFY
301: STITRARFEE MNMDLFRKCM EPVEKCLRDA KMDKSTVHDV VLVGGSTRIP KVQQLLQDFF NGKELCKSIN PDEAVAYGAA VQAAILSGEG NEKVQDLLLL
401: DVTPLSLGLE TAGGVMTVLI PRNTTIPTKK EQVFSTYSDN QPGVLIQVYE GERTRTRDNN LLGKFELSGI PPAPRGVPQI TVCFDIDANG ILNVSAEDKT
501: TGQKNKITIT NDKGRLSKEE IEKMVQEAEK YKSEDEEHKK KVESKNALEN YSYNMRNTIK DEKIASKLPA DDKKKIEDAI DAAIQWLDTN QLAEADEFED
601: KMKELEALCN PIIAKMYQGA GADMEGGMDD DTPAASGGPG PKIEEVD

Best Arabidopsis Sequence Match ( AT5G02500.1 )
(BLAST)

001: MSGKGEGPAI GIDLGTTYSC VGVWQHDRVE IIANDQGNRT TPSYVAFTDS ERLIGDAAKN QVAMNPVNTV FDAKRLIGRR FSDSSVQSDM KLWPFKIQAG
101: PADKPMIYVE YKGEEKEFAA EEISSMVLIK MREIAEAYLG VTIKNAVVTV PAYFNDSQRQ ATKDAGVIAG LNVMRIINEP TAAAIAYGLD KKATSVGEKN
201: VLIFDLGGGT FDVSLLTIEE GIFEVKATAG DTHLGGEDFD NRMVNHFVQE FKRKSKKDIT GNPRALRRLR TSCERAKRTL SSTAQTTIEI DSLYEGIDFY
301: STITRARFEE LNMDLFRKCM EPVEKCLRDA KMDKSTVHDV VLVGGSTRIP KVQQLLQDFF NGKELCKSIN PDEAVAYGAA VQGAILSGEG NEKVQDLLLL
401: DVTPLSLGLE TAGGVMTTLI PRNTTIPTKK EQVFSTYSDN QPGVLIQVYE GERARTKDNN LLGKFELSGI PPAPRGVPQI TVCFDIDANG ILNVSAEDKT
501: TGQKNKITIT NDKGRLSKDE IEKMVQEAEK YKSEDEEHKK KVEAKNALEN YAYNMRNTIQ DEKIGEKLPA ADKKKIEDSI EQAIQWLEGN QLAEADEFED
601: KMKELESICN PIIAKMYQGA GGEAGGPGAS GMDDDAPPAS GGAGPKIEEV D

Arabidopsis Description

MED37EProbable mediator of RNA polymerase II transcription subunit 37e [Source:UniProtKB/Swiss-Prot;Acc:P22953]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.