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Wheat
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Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: golgi, plastid

Predictor Summary:
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:golgi, plastid
Any Predictor:cytosol
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 plastid: 16595579
plastid: 22160430
golgi: 23128297
golgi: 25769308
mitochondrion: 26136264
msms PMID: 22160430 doi
AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo
Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.
msms PMID: 25769308 doi
AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré
INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.
msms PMID: 26136264 doi
S Wang, G Zhang, Y Zhang, Q Song, Z Chen, J Wang, J Guo, N Niu, J Wang, S Ma
College of Agronomy, Northwest A&F University, National Yangling Agricultural Biotechnology & Breeding Center, Yangling Branch of State Wheat Improvement Centre, Wheat Breeding Engineering Research Center, Ministry of Education, Key Laboratory of Crop Heterosis of Shaanxi Province, Yangling, Shaanxi 712100, P. R. China zhanggaisheng18@sohu.com., College of Agronomy, Northwest A&F University, National Yangling Agricultural Biotechnology & Breeding Center, Yangling Branch of State Wheat Improvement Centre, Wheat Breeding Engineering Research Center, Ministry of Education, Key Laboratory of Crop Heterosis of Shaanxi Province, Yangling, Shaanxi 712100, P. R. China., Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, P. R. China.
msms PMID: 16595579 doi
Y Balmer, WH Vensel, FM DuPont, BB Buchanan, WJ Hurkman
Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.
msms, gfp PMID: 23128297 doi
M Suliman, AL Chateigner-Boutin, M Francin-Allami, A Partier, B Bouchet, J Salse, C Pont, J Marion, H Rogniaux, D Tessier, F Guillon, C Larré
INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS6A01G337100.4 Wheat cytosol 100.0 100.0
TraesCS6D01G317700.1 Wheat cytosol 100.0 100.0
TraesCS2B01G374700.1 Wheat cytosol 99.85 99.85
HORVU6Hr1G081460.2 Barley cytosol, plasma membrane 99.69 99.69
TraesCS5B01G087700.4 Wheat cytosol 99.38 99.38
TraesCS5B01G492500.1 Wheat cytosol 93.2 93.06
TraesCS1B01G294300.1 Wheat cytosol, golgi, unclear 91.65 91.51
TraesCS3B01G390700.1 Wheat cytosol 91.96 91.26
TraesCS4B01G206700.1 Wheat cytosol 91.81 91.24
TraesCS4B01G142400.1 Wheat cytosol 93.97 90.88
TraesCS3B01G390800.1 Wheat cytosol 86.86 90.65
TraesCS5B01G129700.2 Wheat cytosol 84.7 88.24
TraesCS4B01G205700.1 Wheat cytosol, golgi 89.49 88.13
TraesCS6B01G374500.1 Wheat cytosol 51.16 71.49
TraesCS4B01G206400.1 Wheat cytosol 63.83 70.24
TraesCS6B01G374400.1 Wheat cytosol 58.58 68.66
TraesCS6B01G374600.1 Wheat cytosol 52.7 66.6
TraesCS2B01G535000.2 Wheat cytosol 51.62 62.55
TraesCS4B01G206300.1 Wheat cytosol 59.97 60.81
TraesCS6B01G058300.1 Wheat endoplasmic reticulum 62.44 60.75
TraesCS7B01G331400.1 Wheat endoplasmic reticulum 59.81 58.64
TraesCS7B01G330900.1 Wheat endoplasmic reticulum 59.97 58.26
TraesCS5B01G298000.1 Wheat endoplasmic reticulum, nucleus, unclear 59.97 58.08
TraesCS3B01G296300.1 Wheat cytosol 45.13 56.7
TraesCS4B01G397600.1 Wheat mitochondrion 46.68 44.61
TraesCS1B01G151300.1 Wheat plastid 47.14 44.46
TraesCS3B01G331400.4 Wheat mitochondrion 46.99 44.44
TraesCS5B01G111200.1 Wheat golgi, plastid 46.06 43.19
TraesCS2B01G125400.1 Wheat vacuole 40.8 39.94
TraesCS5B01G267900.1 Wheat peroxisome 46.21 37.14
Protein Annotations
Gene3D:1.20.1270.10MapMan:19.1.5.1Gene3D:2.60.34.10Gene3D:3.30.30.30Gene3D:3.30.420.40Gene3D:3.90.640.10
ncoils:CoilInterPro:HSP70_C_sfInterPro:HSP70_peptide-bd_sfInterPro:Heat_shock_70_CSInterPro:Hsp_70_famInterPro:IPR029047
InterPro:IPR029048PFAM:PF00012PRINTS:PR00301ScanProsite:PS00297ScanProsite:PS00329ScanProsite:PS01036
PANTHER:PTHR19375PANTHER:PTHR19375:SF308SUPFAM:SSF100920SUPFAM:SSF100934SUPFAM:SSF53067EnsemblPlantsGene:TraesCS6B01G367800
EnsemblPlants:TraesCS6B01G367800.1TIGR:cd10233SEG:seg:::
Description
No Description!
Coordinates
chr6B:-:641409252..641412893
Molecular Weight (calculated)
71127.6 Da
IEP (calculated)
4.803
GRAVY (calculated)
-0.409
Length
647 amino acids
Sequence
(BLAST)
001: MAAKGDGPAI GIDLGTTYSC VGVWQHDRVE IIANDQGNRT TPSYVAFTDS ERLIGDAAKN QVAMNPINTV FDAKRLIGRR FTDSTVQSDI KLWPFKVVAG
101: PGDKPMINVQ YKGEEKQFAA EEISSMVLIK MREIAEAFLG TTVKNAVVTV PAYFNDSQRQ ATKDAGVIAG INVLRIINEP TAAAIAYGLD KKASSVGEKN
201: VLIFDLGGGT FDVSLLTIEE GIFEVKATAG DTHLGGEDFD NRMVNHFVQE FKRKNKKDIS GNPRALRRLR TSCERAKRTL SSTAQTTIEI DSLFEGIDFY
301: STITRARFEE MNMDLFRKCM EPVEKCLRDA KMDKSTVHDV VLVGGSTRIP RVQQLLQDFF NGKELCKSIN PDEAVAYGAA VQAAILSGEG NEKVQDLLLL
401: DVTPLSLGLE TAGGVMTVLI PRNTTIPTKK EQVFSTYSDN QPGVLIQVYE GERTRTRDNN LLGKFELSGI PPAPRGVPQI TVCFDIDANG ILNVSAEDKT
501: TGQKNKITIT NDKGRLSKEE IEKMVQEAEK YKSEDEEHKK KVESKNALEN YSYNMRNTIK DEKIASKLPA DDKKKIEDAI DAAIQWLDTN QLAEADEFED
601: KMKELEALCN PIIAKMYQGA GADMEGGMDD DTPAASGGAG PKIEEVD
Best Arabidopsis Sequence Match ( AT5G02500.1 )
(BLAST)
001: MSGKGEGPAI GIDLGTTYSC VGVWQHDRVE IIANDQGNRT TPSYVAFTDS ERLIGDAAKN QVAMNPVNTV FDAKRLIGRR FSDSSVQSDM KLWPFKIQAG
101: PADKPMIYVE YKGEEKEFAA EEISSMVLIK MREIAEAYLG VTIKNAVVTV PAYFNDSQRQ ATKDAGVIAG LNVMRIINEP TAAAIAYGLD KKATSVGEKN
201: VLIFDLGGGT FDVSLLTIEE GIFEVKATAG DTHLGGEDFD NRMVNHFVQE FKRKSKKDIT GNPRALRRLR TSCERAKRTL SSTAQTTIEI DSLYEGIDFY
301: STITRARFEE LNMDLFRKCM EPVEKCLRDA KMDKSTVHDV VLVGGSTRIP KVQQLLQDFF NGKELCKSIN PDEAVAYGAA VQGAILSGEG NEKVQDLLLL
401: DVTPLSLGLE TAGGVMTTLI PRNTTIPTKK EQVFSTYSDN QPGVLIQVYE GERARTKDNN LLGKFELSGI PPAPRGVPQI TVCFDIDANG ILNVSAEDKT
501: TGQKNKITIT NDKGRLSKDE IEKMVQEAEK YKSEDEEHKK KVEAKNALEN YAYNMRNTIQ DEKIGEKLPA ADKKKIEDSI EQAIQWLEGN QLAEADEFED
601: KMKELESICN PIIAKMYQGA GGEAGGPGAS GMDDDAPPAS GGAGPKIEEV D
Arabidopsis Description
MED37EProbable mediator of RNA polymerase II transcription subunit 37e [Source:UniProtKB/Swiss-Prot;Acc:P22953]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.