Factsheet for HORVU6Hr1G081460.2

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, cytosol

Predictor Summary:

cytosol 4
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 29385242

msms PMID: 29385242 doi

K Witzel, A Matros, ALB Møller, E Ramireddy, C Finnie, M Peukert, T Rutten, A Herzog, G Kunze, M Melzer, S Kaspar-Schoenefeld, T Schmülling, B Svensson, HP Mock

Biosystems Engineering, Fraunhofer Institute for Factory Operation and Automation, Joseph-von-Fraunhofer-Straße 1, 39106, Magdeburg, Germany., Institute of Biology/Applied Genetics, Dahlem Centre of Plant Sciences, Free University of Berlin, Albrecht-Thaer-Weg 6, 14195, Berlin, Germany., Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstraße 3, 06466, Stadt Seeland, Gatersleben, Germany., Leibniz Institute of Vegetable and Ornamental Crops, Theodor-Echtermeyer-Weg 1, 14979, Großbeeren, Germany., Technical University of Denmark, Søltofts Plads, Building 224, 2800, Kongens Lyngby, Denmark.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G374700.1	Wheat	cytosol	99.85	99.85
TraesCS6D01G317700.1	Wheat	cytosol	99.69	99.69
TraesCS6B01G367800.1	Wheat	golgi, plastid	99.69	99.69
TraesCS6A01G337100.4	Wheat	cytosol	99.69	99.69
HORVU5Hr1G021300.3	Barley	cytosol	99.38	99.38
HORVU5Hr1G021310.1	Barley	cytosol	62.13	99.26
HORVU5Hr1G113180.1	Barley	cytosol	93.51	93.36
HORVU1Hr1G072220.4	Barley	cytosol	83.62	91.85
HORVU4Hr1G059390.1	Barley	cytosol	91.81	91.24
HORVU4Hr1G059260.1	Barley	cytosol	89.03	87.67
HORVU3Hr1G086500.3	Barley	cytosol, plastid	91.96	84.4
HORVU2Hr1G112630.2	Barley	cytosol	54.25	69.23
HORVU6Hr1G082600.1	Barley	cytosol, mitochondrion	51.0	68.18
HORVU4Hr1G059210.1	Barley	cytosol, mitochondrion, plastid	48.07	67.03
HORVU6Hr1G082510.2	Barley	cytosol	49.0	66.6
HORVU6Hr1G009570.1	Barley	cytosol	42.66	64.19
HORVU6Hr1G094830.1	Barley	cytosol	56.57	60.2
HORVU5Hr1G078400.1	Barley	plasma membrane	60.59	58.42
HORVU7Hr1G098810.1	Barley	endoplasmic reticulum	59.2	56.99
HORVU2Hr1G122760.1	Barley	endoplasmic reticulum	57.34	55.62
HORVU2Hr1G122800.1	Barley	extracellular, golgi	55.18	53.93
HORVU0Hr1G006930.3	Barley	cytosol	34.62	46.76
HORVU3Hr1G030980.2	Barley	cytosol	44.2	46.28
HORVU4Hr1G012460.2	Barley	cytosol, peroxisome	46.06	44.95
HORVU4Hr1G089090.8	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	46.37	44.31
HORVU3Hr1G073230.9	Barley	endoplasmic reticulum, golgi	47.14	43.7
HORVU5Hr1G073730.1	Barley	plastid	44.36	43.62
HORVU5Hr1G032650.1	Barley	plastid	46.06	43.06
HORVU1Hr1G030790.1	Barley	plastid	47.14	39.1

Protein Annotations

Gene3D:1.20.1270.10	MapMan:19.1.5.1	Gene3D:2.60.34.10	Gene3D:3.30.30.30	Gene3D:3.30.420.40	Gene3D:3.90.640.10
ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	EnsemblPlantsGene:HORVU6Hr1G081460
EnsemblPlants:HORVU6Hr1G081460.2	InterPro:HSP70_C_sf	InterPro:HSP70_peptide-bd_sf	InterPro:Heat_shock_70_CS	InterPro:Hsp_70_fam	InterPro:IPR029047
InterPro:IPR029048	UniProt:M0WQY8	PFAM:PF00012	PRINTS:PR00301	ScanProsite:PS00297	ScanProsite:PS00329
ScanProsite:PS01036	PANTHER:PTHR19375	PANTHER:PTHR19375:SF308	SUPFAM:SSF100920	SUPFAM:SSF100934	SUPFAM:SSF53067
UniParc:UPI000295B437	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chrchr6H:-:545779445..545783459

Molecular Weight (calculated)

71111.6 Da

IEP (calculated)

4.805

GRAVY (calculated)

-0.405

Length

647 amino acids

Sequence
(BLAST)

001: MAAKGDGPAI GIDLGTTYSC VGVWQHDRVE IIANDQGNRT TPSYVAFTDS ERLIGDAAKN QVAMNPINTV FDAKRLIGRR FTDSTVQSDI KLWPFKVVAG
101: PGDKPMINVQ YKGEEKQFAA EEISSMVLIK MREIAEAFLG TTVKNAVVTV PAYFNDSQRQ ATKDAGVIAG INVLRIINEP TAAAIAYGLD KKASSVGEKN
201: VLIFDLGGGT FDVSLLTIEE GIFEVKATAG DTHLGGEDFD NRMVNHFVQE FKRKNKKDIS GNPRALRRLR TSCERAKRTL SSTAQTTIEI DSLFEGIDFY
301: STITRARFEE MNMDLFRKCM EPVEKCLRDA KMDKSTVHDV VLVGGSTRIP RVQQLLQDFF NGKELCKSIN PDEAVAYGAA VQAAILSGEG NEKVQDLLLL
401: DVTPLSLGLE TAGGVMTVLI PRNTTIPTKK EQVFSTYSDN QPGVLIQVYE GERTRTRDNN LLGKFELSGI PPAPRGVPQI TVCFDIDANG ILNVSAEDKT
501: TGQKNKITIT NDKGRLSKEE IEKMVQEAEK YKSEDEEHKK KVESKNALEN YSYNMRNTIK DEKIASKLPA DDKKKIEEAI DAAIQWLDAN QLAEADEFED
601: KMKELEALCN PIIAKMYQGA GADMEGGMDD DTPAASGGAG PKIEEVD

Best Arabidopsis Sequence Match ( AT5G02500.1 )
(BLAST)

001: MSGKGEGPAI GIDLGTTYSC VGVWQHDRVE IIANDQGNRT TPSYVAFTDS ERLIGDAAKN QVAMNPVNTV FDAKRLIGRR FSDSSVQSDM KLWPFKIQAG
101: PADKPMIYVE YKGEEKEFAA EEISSMVLIK MREIAEAYLG VTIKNAVVTV PAYFNDSQRQ ATKDAGVIAG LNVMRIINEP TAAAIAYGLD KKATSVGEKN
201: VLIFDLGGGT FDVSLLTIEE GIFEVKATAG DTHLGGEDFD NRMVNHFVQE FKRKSKKDIT GNPRALRRLR TSCERAKRTL SSTAQTTIEI DSLYEGIDFY
301: STITRARFEE LNMDLFRKCM EPVEKCLRDA KMDKSTVHDV VLVGGSTRIP KVQQLLQDFF NGKELCKSIN PDEAVAYGAA VQGAILSGEG NEKVQDLLLL
401: DVTPLSLGLE TAGGVMTTLI PRNTTIPTKK EQVFSTYSDN QPGVLIQVYE GERARTKDNN LLGKFELSGI PPAPRGVPQI TVCFDIDANG ILNVSAEDKT
501: TGQKNKITIT NDKGRLSKDE IEKMVQEAEK YKSEDEEHKK KVEAKNALEN YAYNMRNTIQ DEKIGEKLPA ADKKKIEDSI EQAIQWLEGN QLAEADEFED
601: KMKELESICN PIIAKMYQGA GGEAGGPGAS GMDDDAPPAS GGAGPKIEEV D

Arabidopsis Description

MED37EProbable mediator of RNA polymerase II transcription subunit 37e [Source:UniProtKB/Swiss-Prot;Acc:P22953]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.