Factsheet for Zm00001d006008_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, secretory
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

extracellular: 20408568
plastid: 22065420
plastid: 23198870
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d014564_P001
Zm00001d036535_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G56010.1	Zm00001d014564_P001	AT5G66570.1	16619024
AT5G56010.1	Zm00001d036535_P001	AT5G66570.1	16619024

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER96954	Sorghum	cytosol	98.42	98.28
EER99075	Sorghum	cytosol	97.85	97.71
Os09t0482600-01	Rice	cytosol	96.13	95.99
Os09t0482400-01	Rice	nucleus	96.13	95.99
Os09t0482100-01	Rice	nucleus	96.13	95.99
Zm00001d031332_P007	Maize	cytosol	92.55	95.7
Zm00001d052855_P001	Maize	plasma membrane	95.7	95.57
GSMUA_Achr9P12680_001	Banana	cytosol	74.93	93.73
GSMUA_Achr10P...	Banana	cytosol, plasma membrane, unclear	83.67	93.44
GSMUA_Achr11P...	Banana	cytosol	77.22	93.41
GSMUA_Achr3P10970_001	Banana	cytosol, plasma membrane	78.94	93.39
GSMUA_Achr3P04010_001	Banana	cytosol	75.21	93.25
Bra035599.1-P	Field mustard	cytosol	74.79	92.72
Solyc12g015880.1.1	Tomato	nucleus	92.55	92.42
Bra035593.1-P	Field mustard	cytosol	88.97	92.41
Bra028924.1-P	Field mustard	cytosol	92.12	91.99
Solyc07g065840.2.1	Tomato	nucleus, plastid	91.69	91.56
Bra028952.1-P	Field mustard	cytosol	91.69	91.56
AT5G56010.1	Thale cress	cytosol	91.4	91.27
Bra028948.1-P	Field mustard	cytosol	91.26	91.26
Zm00001d020898_P002	Maize	cytosol	92.69	91.26
CDY11961	Canola	cytosol	47.56	91.21
CDY22598	Canola	cytosol	61.75	90.74
CDY11967	Canola	cytosol	74.64	90.45
AT5G56000.1	Thale cress	cytosol	90.54	90.41
AT5G56030.2	Thale cress	cytosol	91.98	88.19
CDY64982	Canola	cytosol	68.48	87.07
CDY20742	Canola	cytosol	68.62	86.93
CDY36807	Canola	cytosol	71.49	86.78
CDY06551	Canola	cytosol	71.2	86.74
KRH33083	Soybean	cytosol	34.81	86.48
CDY11921	Canola	cytosol	66.33	86.22
CDY36775	Canola	cytosol	18.05	85.71
CDY36771	Canola	cytosol	17.91	85.03
Zm00001d024903_P001	Maize	plasma membrane	86.53	84.59
CDY36776	Canola	cytosol	43.84	84.3
CDY36772	Canola	cytosol	43.84	84.3
CDY11962	Canola	cytosol	17.48	84.14
KRH05319	Soybean	endoplasmic reticulum	34.81	75.23
PGSC0003DMT400014812	Potato	cytosol	22.78	66.25
Zm00001d036401_P001	Maize	plasma membrane	51.15	44.4
Zm00001d014792_P003	Maize	plasma membrane	51.0	44.06
Zm00001d031274_P001	Maize	cytosol	8.6	43.48
VIT_05s0062g00690.t01	Wine grape	cytosol	14.9	42.98
TraesCS5D01G258900.2	Wheat	plastid	44.56	39.82
Zm00001d020827_P001	Maize	mitochondrion	45.13	39.52
Zm00001d052809_P002	Maize	plastid	44.56	39.22
Zm00001d035285_P003	Maize	extracellular	42.69	37.06
Zm00001d041719_P001	Maize	mitochondrion	42.84	36.78
Zm00001d009931_P001	Maize	cytosol	9.31	36.11
Os09t0534600-01	Rice	endoplasmic reticulum, golgi, plasma membrane	14.9	24.13
TraesCS5D01G258800.1	Wheat	cytosol	0.29	0.8

Protein Annotations

Gene3D:1.20.120.790	EntrezGene:103647533	MapMan:19.1.6.1	Gene3D:3.30.230.80	Gene3D:3.30.565.10	Gene3D:3.30.70.2140
Gene3D:3.40.50.11260	UniProt:A0A1D6ES19	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005524	GO:GO:0006457	GO:GO:0006950	GO:GO:0008150	GO:GO:0009987
GO:GO:0051082	InterPro:HATPase_C	InterPro:HATPase_C_sf	InterPro:HSP90_C	InterPro:Heat_shock_protein_90_CS	InterPro:Hsp90_N
InterPro:Hsp90_fam	InterPro:IPR036890	InterPro:IPR037196	HAMAP:MF_00505	ProteinID:ONM22533.1	PFAM:PF00183
PFAM:PF02518	PIRSF:PIRSF002583	PRINTS:PR00775	ScanProsite:PS00298	PANTHER:PTHR11528	PANTHER:PTHR11528:SF74
InterPro:Ribosomal_S5_D2-typ_fold	SMART:SM00387	SUPFAM:SSF110942	SUPFAM:SSF54211	SUPFAM:SSF55874	UniParc:UPI00022170BD
EnsemblPlantsGene:Zm00001d006008	EnsemblPlants:Zm00001d006008_P001	EnsemblPlants:Zm00001d006008_T001	SEG:seg	:	:

Description

Heat shock protein 90-2

Coordinates

chr2:+:195179025..195182945

Molecular Weight (calculated)

80176.3 Da

IEP (calculated)

4.730

GRAVY (calculated)

-0.607

Length

698 amino acids

Sequence
(BLAST)

001: MASETETFAF QAEINQLLSL IINTFYSNKE IFLRELISNS SDALDKIRFE SLTDKSKLDA QPELFIHLVP DKATNTLSII DSGIGMTKSD LVNNLGTIAR
101: SGTKEFMEAL AAGADVSMIG QFGVGFYSAY LVADRVVVTT KHNDDEQYVW ESQAGGSFTV TRDTSGEQLG RGTKITLFLK DDQLEYLEER RLKDLVKKHS
201: EFISYPISLW TEKTTEKEIS DDEDEEEKKD AEEGKVEDVD EKEEKEKKKK KIKEVSHEWS LVNKQKPIWM RKPEEITKEE YAAFYKSLTN DWEEHLAVKH
301: FSVEGQLEFK AVLFVPKRAP FDLFDTKKKQ NNIKLYVRRV FIMDNCEELI PEWLSFVKGI VDSEDLPLNI SRETLQQNKI LKVIRKNLVK KCVELFFEIA
401: ENKEDYNKFY EAFSKNLKLG IHEDSQNRTK IAELLRYHST KSGDELTSLK DYVTRMKEGQ NDIYYITGES KKAVENSPFL EKLKKRGYEV LYMVDAIDEY
501: AVGQLKEFEG KKLVSATKEG LKLDETEDEK KRKEELKEKF EGLCKVIKEV LGDKVEKVVV SDRVVDSPCC LVTGEYGWTA NMERIMKAQA LRDSSMAGYM
601: SSKKTMEINP ENPIMDELRK RAEADKNDKS VKDLVMLLFE TALLTSGFSL DDPNTFGNRI HRMLKLGLSI DEDEPVEAEA EMPQLEDDAG ESKMEEVD

Best Arabidopsis Sequence Match ( AT5G56000.1 )
(BLAST)

001: MADAETFAFQ AEINQLLSLI INTFYSNKEI FLRELISNSS DALDKIRFES LTDKSKLDGQ PELFIHIIPD KTNNTLTIID SGIGMTKADL VNNLGTIARS
101: GTKEFMEALA AGADVSMIGQ FGVGFYSAYL VADKVVVTTK HNDDEQYVWE SQAGGSFTVT RDTSGEALGR GTKMILYLKE DQMEYIEERR LKDLVKKHSE
201: FISYPISLWI EKTIEKEISD DEEEEEKKDE EGKVEEIDEE KEKEEKKKKK IKEVTHEWDL VNKQKPIWMR KPEEINKEEY AAFYKSLSND WEEHLAVKHF
301: SVEGQLEFKA ILFVPKRAPF DLFDTKKKPN NIKLYVRRVF IMDNCEDIIP DYLGFVKGIV DSEDLPLNIS RETLQQNKIL KVIRKNLVKK CLELFFEIAE
401: NKEDYNKFYE AFSKNLKLGI HEDSQNRTKI AELLRYHSTK SGDELTSLKD YVTRMKEGQN EIFYITGESK KAVENSPFLE KLKKKGYEVL YMVDAIDEYA
501: IGQLKEFEGK KLVSATKEGL KLEETDDEKK KKEELKEKFE GLCKVIKDVL GDKVEKVIVS DRVVDSPCCL VTGEYGWTAN MERIMKAQAL KDSNTGGYMS
601: SKKTMEINPE NSIMDELRKR AEADKNDKSV KDLVLLLFET ALLTSGFSLD EPNTFGSRIH RMLKLGLSIE EDDAVEADAE MPPLEDDADA EGSKMEEVD

Arabidopsis Description

HSP90-4Hsp81.4 [Source:UniProtKB/TrEMBL;Acc:A0A178UQ52]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.