Factsheet for TraesCS5D01G258900.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

plastid: 16481623
plastid: 16595579
plastid: 18419817
mitochondrion: 21043471
golgi: 23128297
golgi: 25769308
unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 18419817 doi

FM Dupont

Western Regional Research Center, United States Department of Agriculture, Agricultural Research Service, 800 Buchanan Street, Albany, CA 94710K, USA.

msms PMID: 21043471 doi

RP Jacoby, AH Millar, NL Taylor

ARC Centre of Excellence in Plant Energy Biology & Centre for Comparative Analysis of Biomolecular Networks, M316, The University of Western Australia, 35 Stirling Highway, Crawley,WA 6009, Australia.

msms PMID: 16595579 doi

Y Balmer, WH Vensel, FM DuPont, BB Buchanan, WJ Hurkman

Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

msms PMID: 16481623 doi

Y Balmer, WH Vensel, N Cai, W Manieri, P Schürmann, WJ Hurkman, BB Buchanan

Department of Plant and Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

msms, gfp PMID: 23128297 doi

M Suliman, AL Chateigner-Boutin, M Francin-Allami, A Partier, B Bouchet, J Salse, C Pont, J Marion, H Rogniaux, D Tessier, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G247300.3
TraesCS2B01G270300.2
TraesCS2D01G248400.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G56010.1	TraesCS2A01G247300.3	AT5G66570.1	16619024
AT5G56010.1	TraesCS2B01G270300.2	AT5G66570.1	16619024
AT5G56010.1	TraesCS2D01G248400.2	AT5G66570.1	16619024

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G113700.1	Wheat	mitochondrion, plastid	61.84	50.47
Bra035599.1-P	Field mustard	cytosol	34.57	47.96
CDY11961	Canola	cytosol	22.28	47.8
Solyc07g065840.2.1	Tomato	nucleus, plastid	41.23	46.07
Solyc12g015880.1.1	Tomato	nucleus	41.1	45.92
AT5G56010.1	Thale cress	cytosol	40.97	45.78
GSMUA_Achr3P10970_001	Banana	cytosol, plasma membrane	34.57	45.76
Bra035593.1-P	Field mustard	cytosol	39.31	45.68
Bra028952.1-P	Field mustard	cytosol	40.72	45.49
Bra028924.1-P	Field mustard	cytosol	40.72	45.49
GSMUA_Achr9P12680_001	Banana	cytosol	32.39	45.34
CDY11967	Canola	cytosol	33.42	45.31
AT5G56000.1	Thale cress	cytosol	40.46	45.21
Bra028948.1-P	Field mustard	cytosol	40.33	45.13
TraesCS7D01G241100.1	Wheat	golgi	40.33	45.0
TraesCS5D01G268000.1	Wheat	cytosol	40.2	44.86
TraesCS2D01G033200.2	Wheat	golgi	40.85	44.8
GSMUA_Achr3P04010_001	Banana	cytosol	32.27	44.76
GSMUA_Achr10P...	Banana	cytosol, plasma membrane, unclear	35.72	44.64
EER96954	Sorghum	cytosol	39.95	44.64
EER99075	Sorghum	cytosol	39.95	44.64
Zm00001d006008_P001	Maize	plastid	39.82	44.56
GSMUA_Achr11P...	Banana	cytosol	32.91	44.54
CDY36776	Canola	cytosol	20.61	44.35
CDY36772	Canola	cytosol	20.61	44.35
AT5G56030.2	Thale cress	cytosol	40.85	43.82
PGSC0003DMT400014812	Potato	cytosol	13.44	43.75
CDY20742	Canola	cytosol	30.73	43.56
CDY64982	Canola	cytosol	30.47	43.35
CDY36807	Canola	cytosol	31.88	43.3
KRH33083	Soybean	cytosol	15.49	43.06
CDY06551	Canola	cytosol	31.5	42.93
CDY11921	Canola	cytosol	29.45	42.83
KRH05319	Soybean	endoplasmic reticulum	16.77	40.56
TraesCS7D01G517800.1	Wheat	golgi, plastid	43.15	40.31
CDY22598	Canola	cytosol	24.33	40.0
CDY36771	Canola	cytosol	7.17	38.1
CDY36775	Canola	cytosol	7.04	37.41
CDY11962	Canola	cytosol	6.66	35.86
VIT_05s0062g00690.t01	Wine grape	cytosol	9.73	31.41
TraesCS6D01G046900.1	Wheat	cytosol	6.4	25.91
Os09t0534600-01	Rice	endoplasmic reticulum, golgi, plasma membrane	7.3	13.23
TraesCS5D01G258800.1	Wheat	cytosol	1.54	4.8

Protein Annotations

Gene3D:1.20.120.790	MapMan:19.1.6.1	Gene3D:3.30.230.80	Gene3D:3.30.565.10	Gene3D:3.30.70.2140	Gene3D:3.40.50.11260
ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524
GO:GO:0006457	GO:GO:0006950	GO:GO:0008150	GO:GO:0009987	GO:GO:0051082	InterPro:HATPase_C
InterPro:HATPase_C_sf	InterPro:HSP90_C	InterPro:Heat_shock_protein_90_CS	InterPro:Hsp90_N	InterPro:Hsp90_fam	InterPro:IPR036890
InterPro:IPR037196	HAMAP:MF_00505	PFAM:PF00183	PFAM:PF02518	PIRSF:PIRSF002583	PRINTS:PR00775
ScanProsite:PS00298	PANTHER:PTHR11528	PANTHER:PTHR11528:SF41	InterPro:Ribosomal_S5_D2-typ_fold	SMART:SM00387	SUPFAM:SSF110942
SUPFAM:SSF54211	SUPFAM:SSF55874	EnsemblPlantsGene:TraesCS5D01G258900	EnsemblPlants:TraesCS5D01G258900.2	TIGR:cd00075	SEG:seg

Description

No Description!

Coordinates

chr5D:-:365125649..365129881

Molecular Weight (calculated)

88365.5 Da

IEP (calculated)

4.654

GRAVY (calculated)

-0.548

Length

781 amino acids

Sequence
(BLAST)

001: MAPALSRTLG PSSVAALRPS PSRGLLRAAL APQGRRPAGA RGVRWEAGRG RLVGARCASA VAEKTAGEEE EAAGEKFEYQ AEVSRLMDLI VHSLYSHKEV
101: FLRELVSNAS DALDKLRFLS VTDPSVLADG GDMEIRIKPD PDAGTITITD SGIGMTKDEL KDCLGTIAQS GTSKFLKALK ENKELGADNG LIGQFGVGFY
201: SAFLVAEKVV VSTKSPKTDK QYIWEAEANS SSYVIREETD PEKMLTRGTQ ITLFLREDDK YEFADPTRIQ GLVKNYSQFV SFPIFTWQEK SRTVEVEEEE
301: SKEAEETAEG EKEKKKKTIT EKYWDWELAN ETKPIWMRNP KEVEETEYNE FYKKAFNEFL DPLAHAHFTT EGEVEFRSVL YIPGMAPLSN EEIMNPKTKN
401: IRLYVKRVFI SDDFDGELFP RYLSFVKGVV DSNDLPLNVS REILQESRIV RIMRKRLVRK TFDMIQDIAD KDNKEDYKKF WESFGKFMKL GCIEDSGNQK
501: RLAPLLRFYS SKNETDLISL DQYVENMPET QKAIYYIATD SLQSAKTAPF LEKLLQKDIE VLYLIEPIDE VAIQNLQTYK EKKFVDISKE DLELGDEDED
601: KEETKQEYTL LCDWIKQQLG DKVAKVQISK RLSSSPCVLV SGKFGWSANM ERLMKAQTLG DTSSLEFMRG RRIFEINPDH PIVKDLSAAC KNEPESTEAK
701: RAVELLYETA LISSGYTPES PAELGGKIYE MMTIALGGRW GRSGTEEAET NADVDSSEGV VTEVVEPSEV RTENENDPWR D

Best Arabidopsis Sequence Match ( AT2G04030.1 )
(BLAST)

001: MAPALSRSLY TSPLTSVPIT PVSSRLSHLR SSFLPHGGAL RTGVSCSWNL EKRCNRFAVK CDAAVAEKET TEEGSGEKFE YQAEVSRLLD LIVHSLYSHK
101: EVFLRELVSN ASDALDKLRF LSVTEPSLLG DGGDLEIRIK PDPDNGTITI TDTGIGMTKE ELIDCLGTIA QSGTSKFLKA LKENKDLGAD NGLIGQFGVG
201: FYSAFLVAEK VVVSTKSPKS DKQYVWESVA DSSSYLIREE TDPDNILRRG TQITLYLRED DKYEFAESTR IKNLVKNYSQ FVGFPIYTWQ EKSRTIEVEE
301: DEPVKEGEEG EPKKKKTTKT EKYWDWELAN ETKPLWMRNS KEVEKGEYNE FYKKAFNEFL DPLAHTHFTT EGEVEFRSIL YIPGMGPLNN EDVTNPKTKN
401: IRLYVKRVFI SDDFDGELFP RYLSFVKGVV DSDDLPLNVS REILQESRIV RIMRKRLIRK TFDMIQEISE SENKEDYKKF WENFGRFLKL GCIEDTGNHK
501: RITPLLRFFS SKNEEELTSL DDYIENMGEN QKAIYYLATD SLKSAKSAPF LEKLIQKDIE VLYLVEPIDE VAIQNLQTYK EKKFVDISKE DLELGDEDEV
601: KDREAKQEFN LLCDWIKQQL GDKVAKVQVS NRLSSSPCVL VSGKFGWSAN MERLMKAQAL GDTSSLEFMR GRRILEINPD HPIIKDLNAA CKNAPESTEA
701: TRVVDLLYDT AIISSGFTPD SPAELGNKIY EMMAMAVGGR WGRVEEEEES STVNEGDDKS GETEVVEPSE VRAESDPWQD

Arabidopsis Description

HSP90-5HSP90.5 [Source:UniProtKB/TrEMBL;Acc:A0A178VPV7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.