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Wheat
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Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 8
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:plastid
ChloroP:plastid
iPSORT:plastid
MultiLoc:plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
 plastid: 16595579
plastid: 18071923
plastid: 18419817
plastid: 22160430
plastid: 23683508
golgi: 25769308
plastid: 28542341
msms PMID: 22160430 doi
AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo
Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.
msms PMID: 25769308 doi
AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré
INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.
msms PMID: 18419817 doi
FM Dupont
Western Regional Research Center, United States Department of Agriculture, Agricultural Research Service, 800 Buchanan Street, Albany, CA 94710K, USA.
msms PMID: 28542341 doi
K Shi, J Gu, H Guo, L Zhao, Y Xie, H Xiong, J Li, S Zhao, X Song, L Liu
National Key Facility for Crop Gene Resources and Genetic Improvement, Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, China., School of Life Sciences, Qingdao Agricultural University, Qingdao, Shandong, China.
msms PMID: 18071923 doi
LA Blomqvist, M Ryberg, C Sundqvist
Department of Plant and Environmental Sciences, Göteborg University, P.O. Box 461, 405 30 Göteborg, Sweden.
msms PMID: 16595579 doi
Y Balmer, WH Vensel, FM DuPont, BB Buchanan, WJ Hurkman
Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.
msms PMID: 23683508 doi
ZH He, HW Li, Y Shen, ZS Li, H Mi
National Laboratory of Plant Molecular Genetics, Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, 300 Fenglin Road, Shanghai 200032, China.
PPI

Inferred distinct locusB in Crop

locusBlocations
TraesCS1A01G285000.2
TraesCS1A01G325600.1
TraesCS1B01G294300.1
TraesCS1B01G338800.1
TraesCS1B01G339000.1
TraesCS1D01G284000.2
TraesCS1D01G327500.1
TraesCS3B01G390700.1
TraesCS3B01G390800.1
TraesCS3D01G351900.1
TraesCS3D01G352400.2
TraesCS4A01G097900.2
TraesCS4B01G206700.1
TraesCS4D01G207500.1
TraesCS7A01G562100.1
TraesCS7D01G001000.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G50820.1 TraesCS1A01G325600.1 AT5G42980.1 15352244
AT3G50820.1 TraesCS1B01G338800.1 AT5G42980.1 15352244
AT3G50820.1 TraesCS1B01G339000.1 AT5G42980.1 15352244
AT3G50820.1 TraesCS1D01G327500.1 AT5G42980.1 15352244
AT3G50820.1 TraesCS7A01G562100.1 AT5G42980.1 15352244
AT3G50820.1 TraesCS7D01G001000.1 AT5G42980.1 15352244
AT5G66570.1 TraesCS1A01G285000.2 AT3G12580.1 16619024
AT5G66570.1 TraesCS1B01G294300.1 AT3G12580.1 16619024
AT5G66570.1 TraesCS1D01G284000.2 AT3G12580.1 16619024
AT5G66570.1 TraesCS3B01G390700.1 AT3G12580.1 16619024
AT5G66570.1 TraesCS3B01G390800.1 AT3G12580.1 16619024
AT5G66570.1 TraesCS3D01G351900.1 AT3G12580.1 16619024
AT5G66570.1 TraesCS3D01G352400.2 AT3G12580.1 16619024
AT5G66570.1 TraesCS4A01G097900.2 AT3G12580.1 16619024
AT5G66570.1 TraesCS4B01G206700.1 AT3G12580.1 16619024
AT5G66570.1 TraesCS4D01G207500.1 AT3G12580.1 16619024
AT5G66570.1 TraesCS1A01G325600.1 AT5G42980.1 15352244
AT5G66570.1 TraesCS1B01G338800.1 AT5G42980.1 15352244
AT5G66570.1 TraesCS1B01G339000.1 AT5G42980.1 15352244
AT5G66570.1 TraesCS1D01G327500.1 AT5G42980.1 15352244
AT5G66570.1 TraesCS7A01G562100.1 AT5G42980.1 15352244
AT5G66570.1 TraesCS7D01G001000.1 AT5G42980.1 15352244
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS2B01G270300.2 Wheat plastid 100.0 100.0
HORVU2Hr1G057700.2 Barley plastid 99.39 99.39
TraesCS2A01G247300.3 Wheat plastid 100.0 98.8
Os01t0501800-01 Rice extracellular, plastid 91.77 90.39
Zm00001d036535_P001 Maize plastid 90.24 89.97
KXG20702 Sorghum plastid 90.55 89.46
Solyc02g065400.2.1 Tomato plastid 82.01 81.76
PGSC0003DMT400007189 Potato cytosol, extracellular, plastid 82.01 81.76
PGSC0003DMT400026009 Potato cytosol, extracellular, plastid 82.01 80.78
VIT_00s0207g00210.t01 Wine grape plastid 81.71 80.72
KRH28553 Soybean nucleus, plastid 80.18 79.94
Solyc02g090030.2.1 Tomato plastid 81.1 79.88
Zm00001d014564_P001 Maize plastid 90.55 79.62
KRH76911 Soybean nucleus, plastid 79.57 79.33
KRH69993 Soybean mitochondrion, nucleus 78.66 79.14
VIT_18s0001g11710.t01 Wine grape plastid 79.57 78.85
KRH08348 Soybean nucleus, plastid 79.57 78.85
AT3G50820.1 Thale cress plastid 77.74 77.04
CDY45242 Canola plastid 76.52 75.6
Bra012083.1-P Field mustard plastid 76.52 75.6
CDY30764 Canola plastid 76.52 75.6
CDX81388 Canola plastid 76.22 75.3
Bra031813.1-P Field mustard plastid 76.22 75.3
Bra037164.1-P Field mustard plastid 76.22 75.3
CDY55088 Canola plastid 76.22 75.3
CDY18611 Canola plastid 76.22 75.3
CDY50981 Canola plastid 75.91 75.0
Bra038863.1-P Field mustard plastid 75.91 74.77
AT5G66570.1 Thale cress plastid 75.61 74.7
CDX72613 Canola plastid 71.34 73.35
CDY42709 Canola plastid 69.82 71.79
Bra017790.1-P Field mustard plastid 69.51 71.47
Solyc07g032640.1.1 Tomato plastid 25.91 66.93
Solyc07g032610.1.1 Tomato cytosol 15.55 66.23
GSMUA_AchrUn_... Banana plastid 23.48 65.81
CDY26519 Canola plastid 74.7 65.68
CDY33308 Canola plastid 75.0 64.57
AT4G37230.1 Thale cress cytosol, nucleus, plastid 26.83 61.54
CDX73783 Canola cytosol 23.17 56.72
Solyc07g032620.1.1 Tomato cytosol, nucleus, plastid 17.99 52.68
Protein Annotations
MapMan:1.1.1.2.2.1Gene3D:2.40.160.30Gene3D:3.30.2050.10GO:GO:0003674GO:GO:0003824GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0006091GO:GO:0008150GO:GO:0008152GO:GO:0009579
GO:GO:0009654GO:GO:0009987GO:GO:0010207GO:GO:0010242GO:GO:0015979GO:GO:0016020
GO:GO:0016043GO:GO:0042549InterPro:OMP/PagP_b-brlPFAM:PF01716InterPro:PSII_MSPPANTHER:PTHR34058
PANTHER:PTHR34058:SF6SUPFAM:SSF56925EnsemblPlantsGene:TraesCS2D01G248400EnsemblPlants:TraesCS2D01G248400.2::
Description
No Description!
Coordinates
chr2D:-:292289183..292290255
Molecular Weight (calculated)
34430.8 Da
IEP (calculated)
5.566
GRAVY (calculated)
-0.264
Length
328 amino acids
Sequence
(BLAST)
001: MAASLQAAAT LMPAKIGGRA SSARPSSHVA RAFGVDAGAR ITCSLQSDIR EVASKCADAA KMAGFALATS ALLVSGASAE GAPKRLTFDE IQSKTYMEVK
101: GTGTANQCPT IDGGVDSFPF KAGKYEMKKF CLEPTSFTVK AEGIQKNEPP AFQKTKLMTR LTYTLDEMEG PLEVGADGTL KFEEKDGIDY AAVTVQLPGG
201: ERVPFLFTVK QLVATGKPES FSGPFLVPSY RGSSFLDPKG RGGSTGYDNA VALPAGGRGD EEELAKENVK NASSSTGNIT LSVTKSKPET GEVIGVFESV
301: QPSDTDLGAK APKDVKIQGV WYAQLESN
Best Arabidopsis Sequence Match ( AT3G50820.1 )
(BLAST)
001: MATSLQAAAT FLQPAKIAAS PSRNVHLRSN QTVGKSFGLD SSQARLTCSL HSDLKDFAGK CSDAAKIAGF ALATSALVVS GAGAEGAPKR LTYDEIQSKT
101: YMEVKGTGTA NQCPTIDGGS ETFSFKAGKY TGKKFCFEPT SFTVKADSVS KNAPPDFQNT KLMTRLTYTL DEIEGPFEVG SDGSVKFKEE DGIDYAAVTV
201: QLPGGERVPF LFTVKQLEAS GKPESFSGKF LVPSYRGSSF LDPKGRGGST GYDNAVALPA GGRGDEEELS KENVKNTAAS VGEITLKITK SKPETGEVIG
301: VFESLQPSDT DLGAKVPKDV KIQGVWYGQI E
Arabidopsis Description
PSBO2Oxygen-evolving enhancer protein 1-2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9S841]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.