CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73815
CDY00784
CDY32970
CDY43592
CDY50531
CDY52661

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G66570.1	CDX73815	AT3G12580.1	16619024
AT5G66570.1	CDY00784	AT3G12580.1	16619024
AT5G66570.1	CDY50531	AT3G12580.1	16619024
AT5G66570.1	CDY52661	AT3G12580.1	16619024
AT5G66570.1	CDY32970	AT5G42980.1	15352244
AT5G66570.1	CDY43592	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY18611	Canola	plastid	99.4	99.4
CDY50981	Canola	plastid	99.1	99.1
CDY45242	Canola	plastid	98.8	98.8
CDY55088	Canola	plastid	98.49	98.49
CDY30764	Canola	plastid	97.59	97.59
AT5G66570.1	Thale cress	plastid	96.39	96.39
CDY26519	Canola	plastid	90.36	80.43
PGSC0003DMT400007189	Potato	cytosol, extracellular, plastid	79.52	80.24
Solyc02g065400.2.1	Tomato	plastid	79.22	79.94
CDY33308	Canola	plastid	90.66	79.0
Solyc02g090030.2.1	Tomato	plastid	79.22	78.98
PGSC0003DMT400026009	Potato	cytosol, extracellular, plastid	79.22	78.98
CDX72613	Canola	plastid	74.1	77.12
Zm00001d036535_P001	Maize	plastid	76.2	76.9
Os01t0501800-01	Rice	extracellular, plastid	76.51	76.28
HORVU2Hr1G057700.2	Barley	plastid	75.3	76.22
TraesCS2B01G270300.2	Wheat	plastid	75.3	76.22
TraesCS2D01G248400.2	Wheat	plastid	75.3	76.22
KXG20702	Sorghum	plastid	76.2	76.2
TraesCS2A01G247300.3	Wheat	plastid	75.3	75.3
CDY42709	Canola	plastid	71.99	74.92
CDX73783	Canola	cytosol	27.71	68.66
Zm00001d014564_P001	Maize	plastid	76.81	68.36
GSMUA_AchrUn_...	Banana	plastid	22.59	64.1
Solyc07g032640.1.1	Tomato	plastid	24.1	62.99
Solyc07g032610.1.1	Tomato	cytosol	14.16	61.04
Solyc07g032620.1.1	Tomato	cytosol, nucleus, plastid	15.96	47.32

Protein Annotations

MapMan:1.1.1.2.2.1	Gene3D:2.40.160.30	Gene3D:3.30.2050.10	GO:A0A078D229	EnsemblPlants:CDX81388	ProteinID:CDX81388
ProteinID:CDX81388.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005509	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009523
GO:GO:0009579	GO:GO:0009654	GO:GO:0009987	GO:GO:0010207	GO:GO:0010242	GO:GO:0015979
GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0019898	GO:GO:0042549	EnsemblPlantsGene:GSBRNA2T00134966001
InterPro:OMP/PagP_b-brl	PFAM:PF01716	InterPro:PSII_MSP	PANTHER:PTHR34058	PANTHER:PTHR34058:SF6	SUPFAM:SSF56925
UniParc:UPI0004EE890B	:	:	:	:	:

Description

BnaC09g07990D

Coordinates

chrLK031824:-:1466414..1468254

Molecular Weight (calculated)

35189.2 Da

IEP (calculated)

5.569

GRAVY (calculated)

-0.359

Length

332 amino acids

Sequence
(BLAST)

001: MAASLQSATT FLQSAKISTA PSRGSAHLRS TQTVGKSFGL ETSSARLTCS FQSDFKDFAG KCSDAVKIAG FALATSALVV SGASAEGAPK RLTYDEIQSK
101: TYMEVKGTGT ANQCPTIDGG SETFSFKPGK YAGKKFCFEP TSFTVKAESV SKNAPPDFQN TKLMTRLTYT LDEIEGPFEV SSDGSVKFKE EDGIDYAAVT
201: VQLPGGERVP FLFTVKQLDA SGKPDNFTGK FLVPSYRGSS FLDPKGRGGS TGYDNAVALP AGGRGDEEEL SKENVKNTAA SVGEITLKVT KSKPETGEVI
301: GVFESLQPSD TDLGAKVPKD VKIQGVWYGQ LE

Best Arabidopsis Sequence Match ( AT5G66570.1 )
(BLAST)

001: MAASLQSTAT FLQSAKIATA PSRGSSHLRS TQAVGKSFGL ETSSARLTCS FQSDFKDFTG KCSDAVKIAG FALATSALVV SGASAEGAPK RLTYDEIQSK
101: TYMEVKGTGT ANQCPTIDGG SETFSFKPGK YAGKKFCFEP TSFTVKADSV SKNAPPEFQN TKLMTRLTYT LDEIEGPFEV ASDGSVNFKE EDGIDYAAVT
201: VQLPGGERVP FLFTVKQLDA SGKPDSFTGK FLVPSYRGSS FLDPKGRGGS TGYDNAVALP AGGRGDEEEL VKENVKNTAA SVGEITLKVT KSKPETGEVI
301: GVFESLQPSD TDLGAKVPKD VKIQGVWYGQ LE

Arabidopsis Description

PSBO1Oxygen-evolving enhancer protein 1-1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P23321]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.