CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY42709	Canola	plastid	95.92	95.92
KRH69993	Soybean	mitochondrion, nucleus	78.68	76.99
VIT_00s0207g00210.t01	Wine grape	plastid	79.0	75.9
KRH08348	Soybean	nucleus, plastid	78.68	75.83
KRH28553	Soybean	nucleus, plastid	77.74	75.38
KRH76911	Soybean	nucleus, plastid	77.43	75.08
CDY55088	Canola	plastid	77.74	74.7
CDY18611	Canola	plastid	77.43	74.4
CDX81388	Canola	plastid	77.12	74.1
CDY50981	Canola	plastid	77.12	74.1
CDY45242	Canola	plastid	77.12	74.1
CDY30764	Canola	plastid	77.12	74.1
VIT_18s0001g11710.t01	Wine grape	plastid	76.8	74.02
Zm00001d036535_P001	Maize	plastid	74.92	72.64
Os01t0501800-01	Rice	extracellular, plastid	75.24	72.07
KXG20702	Sorghum	plastid	74.61	71.69
HORVU2Hr1G057700.2	Barley	plastid	73.35	71.34
TraesCS2B01G270300.2	Wheat	plastid	73.35	71.34
TraesCS2D01G248400.2	Wheat	plastid	73.35	71.34
TraesCS2A01G247300.3	Wheat	plastid	73.35	70.48
CDY26519	Canola	plastid	74.92	64.08
Zm00001d014564_P001	Maize	plastid	74.61	63.81
CDY33308	Canola	plastid	75.24	62.99
CDX73783	Canola	cytosol	23.82	56.72
GSMUA_AchrUn_...	Banana	plastid	19.44	52.99

Protein Annotations

MapMan:1.1.1.2.2.1	Gene3D:2.40.160.30	Gene3D:3.30.2050.10	GO:A0A078CCB6	EnsemblPlants:CDX72613	ProteinID:CDX72613
ProteinID:CDX72613.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009579	GO:GO:0009654	GO:GO:0009987
GO:GO:0010207	GO:GO:0010242	GO:GO:0015979	GO:GO:0016020	GO:GO:0016043	GO:GO:0042549
EnsemblPlantsGene:GSBRNA2T00100159001	InterPro:OMP/PagP_b-brl	PFAM:PF01716	InterPro:PSII_MSP	PANTHER:PTHR34058	PANTHER:PTHR34058:SF6
SUPFAM:SSF56925	UniParc:UPI0004EB7FDE	:	:	:	:

Description

BnaC07g46350D

Coordinates

chrLK031796:-:2188169..2189468

Molecular Weight (calculated)

34080.4 Da

IEP (calculated)

6.550

GRAVY (calculated)

-0.255

Length

319 amino acids

Sequence
(BLAST)

001: MAAVTTVALQ SLTAAKLHPP SQSVSKSFKP VTRRVSCSLH DDLKNLSLNC VEATKIAGFA LATSALVVSG ASAEGVPKRL TYEEIQSKTY MEVKGTGTAN
101: QCPTIEGGLE SFAIKPGKYY AKKVCLEPTS FTVKAEGVSK NAKPVFQNTK LMTRLTYTLD EIEGPFDVAS DGTVRFLEKD GIDYAAVTVQ LPGGERVPFL
201: FTIKQLVASG KPESFGGDFL VPSYRGSSFL DPKGRGGSTG YDNAVALPAR GDDEELDKEN NKNTAASVGE ITFSVTKSKP ESGEVIGLFE SIQPSDTDLG
301: AKTPKDVKIQ GIWYAKLEQ

Best Arabidopsis Sequence Match ( AT4G37230.1 )
(BLAST)

001: MTSLTYTLDE IEGPFEVDYA AVTVHNFLVG SVYRSCSRSS SSWHRRGYFG PKSIPSAFTQ GHVGNKSDQY QGYDNAVALP ARGNNEELAK ENNKITLSVT
101: KSNPESGEVI GAFESIQPSD TDLGATTPKD VKIQGIWYCQ LDE

Arabidopsis Description

Photosystem II manganese-stabilising protein (PsbO) family [Source:UniProtKB/TrEMBL;Acc:Q9SW65]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.