CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra017790.1-P	Field mustard	plastid	98.12	98.12
CDX72613	Canola	plastid	95.92	95.92
KRH69993	Soybean	mitochondrion, nucleus	76.49	74.85
VIT_00s0207g00210.t01	Wine grape	plastid	76.8	73.8
KRH08348	Soybean	nucleus, plastid	76.49	73.72
KRH28553	Soybean	nucleus, plastid	75.55	73.25
KRH76911	Soybean	nucleus, plastid	75.24	72.95
CDY55088	Canola	plastid	75.55	72.59
CDY18611	Canola	plastid	75.24	72.29
CDY30764	Canola	plastid	74.92	71.99
CDX81388	Canola	plastid	74.92	71.99
CDY50981	Canola	plastid	74.92	71.99
CDY45242	Canola	plastid	74.92	71.99
VIT_18s0001g11710.t01	Wine grape	plastid	74.61	71.9
Zm00001d036535_P001	Maize	plastid	73.35	71.12
Os01t0501800-01	Rice	extracellular, plastid	73.67	70.57
KXG20702	Sorghum	plastid	73.35	70.48
HORVU2Hr1G057700.2	Barley	plastid	71.79	69.82
TraesCS2B01G270300.2	Wheat	plastid	71.79	69.82
TraesCS2D01G248400.2	Wheat	plastid	71.79	69.82
TraesCS2A01G247300.3	Wheat	plastid	71.79	68.98
Zm00001d014564_P001	Maize	plastid	73.04	62.47
CDY26519	Canola	plastid	72.73	62.2
CDY33308	Canola	plastid	73.04	61.15
CDX73783	Canola	cytosol	23.51	55.97
GSMUA_AchrUn_...	Banana	plastid	19.12	52.14

Protein Annotations

MapMan:1.1.1.2.2.1	Gene3D:2.40.160.30	Gene3D:3.30.2050.10	GO:A0A078HZC6	UniProt:A0A078HZC6	EnsemblPlants:CDY42709
ProteinID:CDY42709	ProteinID:CDY42709.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005509
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152
GO:GO:0009523	GO:GO:0009579	GO:GO:0009654	GO:GO:0009987	GO:GO:0010207	GO:GO:0010242
GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0019898	GO:GO:0042549
GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00075243001	InterPro:OMP/PagP_b-brl	PFAM:PF01716	InterPro:PSII_MSP	PANTHER:PTHR34058
PANTHER:PTHR34058:SF6	SUPFAM:SSF56925	UniParc:UPI0004EE79E3	:	:	:

Description

BnaA03g53620DBnaA03g53620D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HZC6]

Coordinates

chrLK032532:-:168128..169436

Molecular Weight (calculated)

34160.5 Da

IEP (calculated)

5.949

GRAVY (calculated)

-0.245

Length

319 amino acids

Sequence
(BLAST)

001: MAAVTTVALQ SLTAAKLHPP SQSVSKSFKP VTRRVSCSLH DDLKNLTLNC VEATKIAGFA LATSALVVSG ASAEGVPKRL TYKDIQSKTY MEVKGTGTAN
101: QCPTIEGGLE SFAIKPGKYY AKKVCLEPTS FTVKAEGVSR NATPFFLNTK LMTRLTYTLD EIEGPFEVAS DGTVRFLEKD GSDYAAVTVQ LPGGERIPFL
201: FTIKQLVATG KPESFGGDFL VPSYRGSSFL DPKGRGGSTG YDNAVALPAR GDDEELDKEN NKNTAASVGE ITFSVTKSKP ESGEVISLFE SIQPSDTDLG
301: AKTPEDVKIQ GIWYAKLEQ

Best Arabidopsis Sequence Match ( AT4G37230.1 )
(BLAST)

001: MTSLTYTLDE IEGPFEVDYA AVTVHNFLVG SVYRSCSRSS SSWHRRGYFG PKSIPSAFTQ GHVGNKSDQY QGYDNAVALP ARGNNEELAK ENNKITLSVT
101: KSNPESGEVI GAFESIQPSD TDLGATTPKD VKIQGIWYCQ LDE

Arabidopsis Description

Photosystem II manganese-stabilising protein (PsbO) family [Source:UniProtKB/TrEMBL;Acc:Q9SW65]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.