CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY32970
CDY43592

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G50820.1	CDY32970	AT5G42980.1	15352244
AT3G50820.1	CDY43592	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra038863.1-P	Field mustard	plastid	87.67	98.2
CDY33308	Canola	plastid	99.73	97.64
AT3G50820.1	Thale cress	plastid	81.77	92.14
CDX81388	Canola	plastid	80.43	90.36
CDY55088	Canola	plastid	80.16	90.06
CDY50981	Canola	plastid	80.16	90.06
CDY45242	Canola	plastid	79.89	89.76
CDY18611	Canola	plastid	79.89	89.76
CDY30764	Canola	plastid	79.62	89.46
PGSC0003DMT400007189	Potato	cytosol, extracellular, plastid	68.9	78.12
Solyc02g065400.2.1	Tomato	plastid	68.63	77.81
Solyc02g090030.2.1	Tomato	plastid	69.17	77.48
PGSC0003DMT400026009	Potato	cytosol, extracellular, plastid	69.17	77.48
CDX72613	Canola	plastid	64.08	74.92
TraesCS2D01G248400.2	Wheat	plastid	65.68	74.7
TraesCS2B01G270300.2	Wheat	plastid	65.68	74.7
HORVU2Hr1G057700.2	Barley	plastid	65.68	74.7
Zm00001d036535_P001	Maize	plastid	65.68	74.47
KXG20702	Sorghum	plastid	65.68	73.8
TraesCS2A01G247300.3	Wheat	plastid	65.68	73.8
Os01t0501800-01	Rice	extracellular, plastid	65.68	73.57
CDY42709	Canola	plastid	62.2	72.73
CDX73783	Canola	cytosol	25.2	70.15
Zm00001d014564_P001	Maize	plastid	66.49	66.49
GSMUA_AchrUn_...	Banana	plastid	19.57	62.39
Solyc07g032640.1.1	Tomato	plastid	21.18	62.2
Solyc07g032610.1.1	Tomato	cytosol	12.6	61.04
Solyc07g032620.1.1	Tomato	cytosol, nucleus, plastid	14.21	47.32

Protein Annotations

MapMan:1.1.1.2.2.1	Gene3D:2.40.160.30	Gene3D:3.30.2050.10	GO:A0A078GMU3	UniProt:A0A078GMU3	EnsemblPlants:CDY26519
ProteinID:CDY26519	ProteinID:CDY26519.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005509
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152
GO:GO:0009523	GO:GO:0009579	GO:GO:0009654	GO:GO:0009987	GO:GO:0010207	GO:GO:0010242
GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0019898	GO:GO:0042549
GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00035359001	InterPro:OMP/PagP_b-brl	PFAM:PF01716	InterPro:PSII_MSP	PANTHER:PTHR34058
PANTHER:PTHR34058:SF6	SUPFAM:SSF56925	TMHMM:TMhelix	UniParc:UPI0004EB7AB8	SEG:seg	:

Description

BnaC01g23800DBnaC01g23800D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GMU3]

Coordinates

chrLK032191:-:306277..308281

Molecular Weight (calculated)

39396.6 Da

IEP (calculated)

6.878

GRAVY (calculated)

-0.202

Length

373 amino acids

Sequence
(BLAST)

001: MATSLKATTA TFLQPAKIAT SSPSRNVHLR SNQTVGKSSG LESSPARLTC SIHSDFKDFV GKCSDAAKIA GFALATSALV VSGASAEGAP KRLTYDEIQS
101: KTYMEVKGTG TANQCPTIDG GSETFSFKPG KYTGKKFCFE PTSFTVKADS VSKNAPPDFQ NTKLMTRLTY TLDEIEGPFE VSSDGSVKFK EEDGIDYAAV
201: TVQLPGGERV PFLFTVKQLE ASGKPDNFSG KFLVPSYRGS SFLDPKGRGG STGYDNAVAL PAGGRGDEEE LSKENVKNTA ASVGEITLKI TKSKPETGEV
301: IGVFESLQPS DTDLGAKVPK DVKIQGVCAT ELLSSTGAQR HICGDNLCSH YLATATLVFL CCLLLLASAL VNL

Best Arabidopsis Sequence Match ( AT3G50820.1 )
(BLAST)

001: MATSLQAAAT FLQPAKIAAS PSRNVHLRSN QTVGKSFGLD SSQARLTCSL HSDLKDFAGK CSDAAKIAGF ALATSALVVS GAGAEGAPKR LTYDEIQSKT
101: YMEVKGTGTA NQCPTIDGGS ETFSFKAGKY TGKKFCFEPT SFTVKADSVS KNAPPDFQNT KLMTRLTYTL DEIEGPFEVG SDGSVKFKEE DGIDYAAVTV
201: QLPGGERVPF LFTVKQLEAS GKPESFSGKF LVPSYRGSSF LDPKGRGGST GYDNAVALPA GGRGDEEELS KENVKNTAAS VGEITLKITK SKPETGEVIG
301: VFESLQPSDT DLGAKVPKDV KIQGVWYGQI E

Arabidopsis Description

PSBO2Oxygen-evolving enhancer protein 1-2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9S841]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.