CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73815
CDY00784
CDY32970
CDY43592
CDY50531
CDY52661

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G66570.1	CDX73815	AT3G12580.1	16619024
AT5G66570.1	CDY00784	AT3G12580.1	16619024
AT5G66570.1	CDY50531	AT3G12580.1	16619024
AT5G66570.1	CDY52661	AT3G12580.1	16619024
AT5G66570.1	CDY32970	AT5G42980.1	15352244
AT5G66570.1	CDY43592	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra012083.1-P	Field mustard	plastid	100.0	100.0
CDX81388	Canola	plastid	98.8	98.8
CDY18611	Canola	plastid	98.8	98.8
CDY30764	Canola	plastid	98.8	98.8
CDY50981	Canola	plastid	98.8	98.8
CDY55088	Canola	plastid	98.19	98.19
AT5G66570.1	Thale cress	plastid	96.99	96.99
PGSC0003DMT400007189	Potato	cytosol, extracellular, plastid	79.52	80.24
Solyc02g065400.2.1	Tomato	plastid	79.22	79.94
CDY26519	Canola	plastid	89.76	79.89
Solyc02g090030.2.1	Tomato	plastid	78.92	78.68
PGSC0003DMT400026009	Potato	cytosol, extracellular, plastid	78.92	78.68
CDY33308	Canola	plastid	90.06	78.48
Zm00001d036535_P001	Maize	plastid	76.51	77.2
CDX72613	Canola	plastid	74.1	77.12
Os01t0501800-01	Rice	extracellular, plastid	77.11	76.88
KXG20702	Sorghum	plastid	76.81	76.81
HORVU2Hr1G057700.2	Barley	plastid	75.6	76.52
TraesCS2B01G270300.2	Wheat	plastid	75.6	76.52
TraesCS2D01G248400.2	Wheat	plastid	75.6	76.52
TraesCS2A01G247300.3	Wheat	plastid	75.6	75.6
CDY42709	Canola	plastid	71.99	74.92
Zm00001d014564_P001	Maize	plastid	77.11	68.63
CDX73783	Canola	cytosol	27.41	67.91
Solyc07g032640.1.1	Tomato	plastid	24.7	64.57
GSMUA_AchrUn_...	Banana	plastid	22.59	64.1
Solyc07g032610.1.1	Tomato	cytosol	14.16	61.04
Solyc07g032620.1.1	Tomato	cytosol, nucleus, plastid	15.96	47.32

Protein Annotations

MapMan:1.1.1.2.2.1	Gene3D:2.40.160.30	Gene3D:3.30.2050.10	GO:A0A078I589	UniProt:A0A078I589	EnsemblPlants:CDY45242
ProteinID:CDY45242	ProteinID:CDY45242.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005509
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152
GO:GO:0009523	GO:GO:0009579	GO:GO:0009654	GO:GO:0009987	GO:GO:0010207	GO:GO:0010242
GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0019898	GO:GO:0042549
GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00081678001	InterPro:OMP/PagP_b-brl	PFAM:PF01716	InterPro:PSII_MSP	PANTHER:PTHR34058
PANTHER:PTHR34058:SF6	SUPFAM:SSF56925	UniParc:UPI00025417DB	:	:	:

Description

BnaA07g12480DBnaA07g12480D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I589]

Coordinates

chrLK032618:+:171663..173317

Molecular Weight (calculated)

35125.1 Da

IEP (calculated)

5.294

GRAVY (calculated)

-0.345

Length

332 amino acids

Sequence
(BLAST)

001: MAASLQSAAT FLQSAKISTA PSRGSAHLRS TQTVGKSFGL ETSSARLTCS FQSDIKDFAG KCSDAVKIAG FALATSALVV SGASAEGAPK RLTYDEIQSK
101: TYMEVKGTGT ANQCPTIDGG SETFSFKPGK YAGKKFCFEP TSFTVKAESV SKNAPPEFQN TKLMTRLTYT LDEIEGPFEV SSDGSVNFKE EDGIDYAAVT
201: VQLPGGERVP FLFTVKQLDA SGKPDNFTGK FLVPSYRGSS FLDPKGRGGS TGYDNAVALP AGGRGDEEEL SKENVKNTAA SVGEITLKVT KSKPETGEVI
301: GVFESLQPSD TDLGAKVPKD VKIQGVWYGQ LE

Best Arabidopsis Sequence Match ( AT5G66570.1 )
(BLAST)

001: MAASLQSTAT FLQSAKIATA PSRGSSHLRS TQAVGKSFGL ETSSARLTCS FQSDFKDFTG KCSDAVKIAG FALATSALVV SGASAEGAPK RLTYDEIQSK
101: TYMEVKGTGT ANQCPTIDGG SETFSFKPGK YAGKKFCFEP TSFTVKADSV SKNAPPEFQN TKLMTRLTYT LDEIEGPFEV ASDGSVNFKE EDGIDYAAVT
201: VQLPGGERVP FLFTVKQLDA SGKPDSFTGK FLVPSYRGSS FLDPKGRGGS TGYDNAVALP AGGRGDEEEL VKENVKNTAA SVGEITLKVT KSKPETGEVI
301: GVFESLQPSD TDLGAKVPKD VKIQGVWYGQ LE

Arabidopsis Description

PSBO1Oxygen-evolving enhancer protein 1-1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P23321]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.