Factsheet for HORVU2Hr1G057700.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

plastid: 15682463
plastid: 16758444

msms PMID: 16758444 doi

B Granvogl, V Reisinger, LA Eichacker

Department für Biologie I, Ludwig-Maximilians-Universität, München, Germany.

msms PMID: 15682463 doi

C Ciambella, P Roepstorff, EM Aro, L Zolla

Department of Environmental Sciences, University of Tuscia, Viterbo, Italy.

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G072220.4
HORVU1Hr1G075560.1
HORVU3Hr1G086500.3
HORVU4Hr1G059390.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G50820.1	HORVU1Hr1G075560.1	AT5G42980.1	15352244
AT5G66570.1	HORVU1Hr1G072220.4	AT3G12580.1	16619024
AT5G66570.1	HORVU3Hr1G086500.3	AT3G12580.1	16619024
AT5G66570.1	HORVU4Hr1G059390.1	AT3G12580.1	16619024
AT5G66570.1	HORVU1Hr1G075560.1	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G248400.2	Wheat	plastid	99.39	99.39
TraesCS2B01G270300.2	Wheat	plastid	99.39	99.39
TraesCS2A01G247300.3	Wheat	plastid	99.39	98.19
Os01t0501800-01	Rice	extracellular, plastid	91.16	89.79
Zm00001d036535_P001	Maize	plastid	89.94	89.67
KXG20702	Sorghum	plastid	90.24	89.16
PGSC0003DMT400007189	Potato	cytosol, extracellular, plastid	81.71	81.46
Solyc02g065400.2.1	Tomato	plastid	81.71	81.46
VIT_00s0207g00210.t01	Wine grape	plastid	82.01	81.02
PGSC0003DMT400026009	Potato	cytosol, extracellular, plastid	82.01	80.78
KRH28553	Soybean	nucleus, plastid	80.49	80.24
Solyc02g090030.2.1	Tomato	plastid	81.1	79.88
KRH76911	Soybean	nucleus, plastid	79.88	79.64
KRH69993	Soybean	mitochondrion, nucleus	78.96	79.45
Zm00001d014564_P001	Maize	plastid	90.24	79.36
VIT_18s0001g11710.t01	Wine grape	plastid	79.88	79.15
KRH08348	Soybean	nucleus, plastid	79.57	78.85
AT3G50820.1	Thale cress	plastid	78.05	77.34
Bra012083.1-P	Field mustard	plastid	76.52	75.6
CDY45242	Canola	plastid	76.52	75.6
CDY30764	Canola	plastid	76.52	75.6
CDX81388	Canola	plastid	76.22	75.3
Bra031813.1-P	Field mustard	plastid	76.22	75.3
Bra037164.1-P	Field mustard	plastid	76.22	75.3
CDY18611	Canola	plastid	76.22	75.3
CDY55088	Canola	plastid	76.22	75.3
CDY50981	Canola	plastid	75.91	75.0
Bra038863.1-P	Field mustard	plastid	75.91	74.77
AT5G66570.1	Thale cress	plastid	75.61	74.7
CDX72613	Canola	plastid	71.34	73.35
CDY42709	Canola	plastid	69.82	71.79
Bra017790.1-P	Field mustard	plastid	69.51	71.47
Solyc07g032640.1.1	Tomato	plastid	25.91	66.93
Solyc07g032610.1.1	Tomato	cytosol	15.55	66.23
GSMUA_AchrUn_...	Banana	plastid	23.48	65.81
CDY26519	Canola	plastid	74.7	65.68
CDY33308	Canola	plastid	75.0	64.57
AT4G37230.1	Thale cress	cytosol, nucleus, plastid	26.83	61.54
CDX73783	Canola	cytosol	23.17	56.72
Solyc07g032620.1.1	Tomato	cytosol, nucleus, plastid	17.99	52.68

Protein Annotations

MapMan:1.1.1.2.2.1	Gene3D:2.40.160.30	Gene3D:3.30.2050.10	EMBL:AK354253	EMBL:AK358425	UniProt:F2CRK1
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005509	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009579	GO:GO:0009654
GO:GO:0009987	GO:GO:0010207	GO:GO:0010242	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021
GO:GO:0016043	GO:GO:0019898	GO:GO:0042549	GO:GO:0055114	EnsemblPlantsGene:HORVU2Hr1G057700	EnsemblPlants:HORVU2Hr1G057700.2
InterPro:OMP/PagP_b-brl	PFAM:PF01716	InterPro:PSII_MSP	PANTHER:PTHR34058	PANTHER:PTHR34058:SF6	SUPFAM:SSF56925
UniParc:UPI0002004703	:	:	:	:	:

Description

Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2CRK1]

Coordinates

chrchr2H:+:371442220..371443669

Molecular Weight (calculated)

34472.8 Da

IEP (calculated)

5.566

GRAVY (calculated)

-0.250

Length

328 amino acids

Sequence
(BLAST)

001: MAASLQAAAT LMPAKIGGRA SSVRPSSHVA RAFGVDAAAR ITCSLQSDIR EVASKCADAA KMAGFALATS ALLVSGASAE GAPKRLTFDE IQSKTYMEVK
101: GTGTANQCPT IDGGVDSFPF KAGKYEMKKF CLEPTSFTVK AEGIQKNEPP AFQKTKLMTR LTYTLDEMEG PLEVGADGTL KFEEKDGIDY AAVTVQLPGG
201: ERVPFLFTVK QLVATGKPES FSGPFLVPSY RGSSFLDPKG RGGSTGYDNA VALPAGGRGD EEELAKENVK NASSSTGNIT LSVTKSKPET GEVIGVFESV
301: QPSDTDLGAK APKDVKIQGV WYAQLESN

Best Arabidopsis Sequence Match ( AT3G50820.1 )
(BLAST)

001: MATSLQAAAT FLQPAKIAAS PSRNVHLRSN QTVGKSFGLD SSQARLTCSL HSDLKDFAGK CSDAAKIAGF ALATSALVVS GAGAEGAPKR LTYDEIQSKT
101: YMEVKGTGTA NQCPTIDGGS ETFSFKAGKY TGKKFCFEPT SFTVKADSVS KNAPPDFQNT KLMTRLTYTL DEIEGPFEVG SDGSVKFKEE DGIDYAAVTV
201: QLPGGERVPF LFTVKQLEAS GKPESFSGKF LVPSYRGSSF LDPKGRGGST GYDNAVALPA GGRGDEEELS KENVKNTAAS VGEITLKITK SKPETGEVIG
301: VFESLQPSDT DLGAKVPKDV KIQGVWYGQI E

Arabidopsis Description

PSBO2Oxygen-evolving enhancer protein 1-2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9S841]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.