Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH76911 | Soybean | nucleus, plastid | 64.34 | 27.96 |
| KRH28553 | Soybean | nucleus, plastid | 63.64 | 27.66 |
| KRH08348 | Soybean | nucleus, plastid | 62.94 | 27.19 |
| KXG20702 | Sorghum | plastid | 62.94 | 27.11 |
| Zm00001d036535_P001 | Maize | plastid | 62.24 | 27.05 |
| KRH69993 | Soybean | mitochondrion, nucleus | 61.54 | 26.99 |
| HORVU2Hr1G057700.2 | Barley | plastid | 61.54 | 26.83 |
| TraesCS2D01G248400.2 | Wheat | plastid | 61.54 | 26.83 |
| TraesCS2B01G270300.2 | Wheat | plastid | 61.54 | 26.83 |
| VIT_00s0207g00210.t01 | Wine grape | plastid | 62.24 | 26.81 |
| Os01t0501800-01 | Rice | extracellular, plastid | 62.24 | 26.73 |
| VIT_18s0001g11710.t01 | Wine grape | plastid | 61.54 | 26.59 |
| TraesCS2A01G247300.3 | Wheat | plastid | 61.54 | 26.51 |
| AT5G66570.1 | Thale cress | plastid | 60.84 | 26.2 |
| AT3G50820.1 | Thale cress | plastid | 59.44 | 25.68 |
| Zm00001d014564_P001 | Maize | plastid | 61.54 | 23.59 |
| Solyc07g032640.1.1 | Tomato | plastid | 0.7 | 0.79 |
| Solyc07g032620.1.1 | Tomato | cytosol, nucleus, plastid | 0.0 | 0.0 |
| Solyc07g032610.1.1 | Tomato | cytosol | 0.0 | 0.0 |
| GSMUA_AchrUn_... | Banana | plastid | 0.0 | 0.0 |
Protein Annotations
| Gene3D:2.40.160.30 | MapMan:35.1 | EntrezGene:829877 | ProteinID:AEE86770.1 | ArrayExpress:AT4G37230 | EnsemblPlantsGene:AT4G37230 |
| RefSeq:AT4G37230 | TAIR:AT4G37230 | RefSeq:AT4G37230-TAIR-G | EnsemblPlants:AT4G37230.1 | TAIR:AT4G37230.1 | Unigene:At.54639 |
| ProteinID:CAB16775.1 | ProteinID:CAB80389.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005509 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0006091 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009523 | GO:GO:0009579 | GO:GO:0009654 | GO:GO:0009987 | GO:GO:0010207 | GO:GO:0010242 |
| GO:GO:0015979 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0019898 | GO:GO:0042549 |
| GO:GO:0055114 | RefSeq:NP_195440.1 | InterPro:OMP/PagP_b-brl | PFAM:PF01716 | PO:PO:0000293 | InterPro:PSII_MSP |
| PANTHER:PTHR34058 | PANTHER:PTHR34058:SF6 | UniProt:Q9SW65 | SUPFAM:SSF56925 | UniParc:UPI00000A9085 | SEG:seg |
Description
Photosystem II manganese-stabilising protein (PsbO) family [Source:UniProtKB/TrEMBL;Acc:Q9SW65]
Coordinates
chr4:+:17516424..17517587
Molecular Weight (calculated)
15687.0 Da
IEP (calculated)
4.721
GRAVY (calculated)
-0.539
Length
143 amino acids
Sequence
(BLAST)
(BLAST)
001: MTSLTYTLDE IEGPFEVDYA AVTVHNFLVG SVYRSCSRSS SSWHRRGYFG PKSIPSAFTQ GHVGNKSDQY QGYDNAVALP ARGNNEELAK ENNKITLSVT
101: KSNPESGEVI GAFESIQPSD TDLGATTPKD VKIQGIWYCQ LDE
101: KSNPESGEVI GAFESIQPSD TDLGATTPKD VKIQGIWYCQ LDE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.