Factsheet for VIT_18s0001g11710.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0207g00210.t01	Wine grape	plastid	88.22	87.95
PGSC0003DMT400007189	Potato	cytosol, extracellular, plastid	83.38	83.89
Solyc02g065400.2.1	Tomato	plastid	83.08	83.59
KRH69993	Soybean	mitochondrion, nucleus	81.27	82.52
KRH08348	Soybean	nucleus, plastid	82.18	82.18
KRH76911	Soybean	nucleus, plastid	81.57	82.07
KRH28553	Soybean	nucleus, plastid	81.57	82.07
PGSC0003DMT400026009	Potato	cytosol, extracellular, plastid	82.48	81.98
Os01t0501800-01	Rice	extracellular, plastid	82.18	81.68
Zm00001d036535_P001	Maize	plastid	80.06	80.55
Solyc02g090030.2.1	Tomato	plastid	80.97	80.48
HORVU2Hr1G057700.2	Barley	plastid	79.15	79.88
TraesCS2B01G270300.2	Wheat	plastid	78.85	79.57
TraesCS2D01G248400.2	Wheat	plastid	78.85	79.57
TraesCS2A01G247300.3	Wheat	plastid	78.85	78.61
KXG20702	Sorghum	plastid	78.55	78.31
AT3G50820.1	Thale cress	plastid	77.95	77.95
CDX72613	Canola	plastid	74.02	76.8
AT5G66570.1	Thale cress	plastid	76.44	76.2
CDY42709	Canola	plastid	71.9	74.61
Bra017790.1-P	Field mustard	plastid	71.6	74.29
Zm00001d014564_P001	Maize	plastid	80.06	71.05
Solyc07g032640.1.1	Tomato	plastid	25.98	67.72
Solyc07g032610.1.1	Tomato	cytosol	15.71	67.53
GSMUA_AchrUn_...	Banana	plastid	23.26	65.81
AT4G37230.1	Thale cress	cytosol, nucleus, plastid	26.59	61.54
Solyc07g032620.1.1	Tomato	cytosol, nucleus, plastid	18.73	55.36

Protein Annotations

MapMan:1.1.1.2.2.1	EntrezGene:100260811	wikigene:100260811	Gene3D:2.40.160.30	Gene3D:3.30.2050.10	EMBL:AM466554
ProteinID:CAN79166	ProteinID:CAN79166.1	ProteinID:CCB45906	ProteinID:CCB45906.1	UniProt:F6H029	EMBL:FN595227
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005509	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009523	GO:GO:0009579
GO:GO:0009654	GO:GO:0009987	GO:GO:0010207	GO:GO:0010242	GO:GO:0015979	GO:GO:0016020
GO:GO:0016021	GO:GO:0016043	GO:GO:0019898	GO:GO:0042549	GO:GO:0055114	EntrezGene:LOC100260811
wikigene:LOC100260811	InterPro:OMP/PagP_b-brl	PFAM:PF01716	InterPro:PSII_MSP	PANTHER:PTHR34058	PANTHER:PTHR34058:SF6
SUPFAM:SSF56925	TIGR:TC53930	UniParc:UPI00015C8237	ArrayExpress:VIT_18s0001g11710	EnsemblPlantsGene:VIT_18s0001g11710	EnsemblPlants:VIT_18s0001g11710.t01
unigene:Vvi.2547	RefSeq:XP_002283699	RefSeq:XP_002283699.1	:	:	:

Description

No Description!

Coordinates

chr18:+:10013495..10014836

Molecular Weight (calculated)

35121.7 Da

IEP (calculated)

7.826

GRAVY (calculated)

-0.268

Length

331 amino acids

Sequence
(BLAST)

001: MAASLHVAAT LRQPTKAGLP AKTGLQLKSS PSVCKAFGYD PAGARLTCSL QTHVKDLAQK CADAAKIAGF ALATSAFLVS GAGAEGVPKR LTYDEIQSKT
101: YMEVKGTGTA NQCPTIDGGV DSFAFKTGSY NMKKFCLEPT SFTVKAEGVS KNAPAEFQNT KLMTRLTYTL DEIEGPFEVS SDRTVKFIEK DGIDYAAVTV
201: QLPGGERVPF LFTIKQLVAS GKPENFGGEF LVPSYRGSSF LDPKGRGGST GYDNAVALPA GGRGDEEELK RENIKDASSS TGKITLSITK SKPESGEVIG
301: VFESIQPSDT DLGAKVPKDV KIQGVWYAQL E

Best Arabidopsis Sequence Match ( AT3G50820.1 )
(BLAST)

001: MATSLQAAAT FLQPAKIAAS PSRNVHLRSN QTVGKSFGLD SSQARLTCSL HSDLKDFAGK CSDAAKIAGF ALATSALVVS GAGAEGAPKR LTYDEIQSKT
101: YMEVKGTGTA NQCPTIDGGS ETFSFKAGKY TGKKFCFEPT SFTVKADSVS KNAPPDFQNT KLMTRLTYTL DEIEGPFEVG SDGSVKFKEE DGIDYAAVTV
201: QLPGGERVPF LFTVKQLEAS GKPESFSGKF LVPSYRGSSF LDPKGRGGST GYDNAVALPA GGRGDEEELS KENVKNTAAS VGEITLKITK SKPETGEVIG
301: VFESLQPSDT DLGAKVPKDV KIQGVWYGQI E

Arabidopsis Description

PSBO2Oxygen-evolving enhancer protein 1-2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9S841]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.