CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 1
plastid 9
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, nucleus
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
ChloroP:	plastid
EpiLoc:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Plant-mPloc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plastid

nucleus: 21132161
mitochondrion: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH01631
KRH70484

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G66570.1	KRH01631	AT3G12580.1	16619024
AT5G66570.1	KRH70484	AT3G12580.1	16619024

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH08348	Soybean	nucleus, plastid	95.09	93.66
KRH28553	Soybean	nucleus, plastid	92.64	91.79
KRH76911	Soybean	nucleus, plastid	91.72	90.88
VIT_00s0207g00210.t01	Wine grape	plastid	88.04	86.45
Solyc02g090030.2.1	Tomato	plastid	84.97	83.18
PGSC0003DMT400026009	Potato	cytosol, extracellular, plastid	84.66	82.88
Solyc02g065400.2.1	Tomato	plastid	83.13	82.37
PGSC0003DMT400007189	Potato	cytosol, extracellular, plastid	83.13	82.37
VIT_18s0001g11710.t01	Wine grape	plastid	82.52	81.27
Os01t0501800-01	Rice	extracellular, plastid	80.67	78.98
HORVU2Hr1G057700.2	Barley	plastid	79.45	78.96
CDX72613	Canola	plastid	76.99	78.68
TraesCS2D01G248400.2	Wheat	plastid	79.14	78.66
TraesCS2B01G270300.2	Wheat	plastid	79.14	78.66
Zm00001d036535_P001	Maize	plastid	79.14	78.42
AT5G66570.1	Thale cress	plastid	79.45	78.01
AT3G50820.1	Thale cress	plastid	79.14	77.95
TraesCS2A01G247300.3	Wheat	plastid	79.14	77.71
KXG20702	Sorghum	plastid	78.53	77.11
CDY42709	Canola	plastid	74.85	76.49
Bra017790.1-P	Field mustard	plastid	74.54	76.18
Zm00001d014564_P001	Maize	plastid	79.75	69.71
Solyc07g032640.1.1	Tomato	plastid	26.69	68.5
Solyc07g032610.1.1	Tomato	cytosol	15.95	67.53
GSMUA_AchrUn_...	Banana	plastid	22.7	63.25
AT4G37230.1	Thale cress	cytosol, nucleus, plastid	26.99	61.54
Solyc07g032620.1.1	Tomato	cytosol, nucleus, plastid	18.4	53.57

Protein Annotations

MapMan:1.1.1.2.2.1	EntrezGene:100811386	Gene3D:2.40.160.30	Gene3D:3.30.2050.10	EMBL:ACUP02000745	EMBL:BT093465
UniProt:C6T7N2	EnsemblPlantsGene:GLYMA_02G061100	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005509
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152
GO:GO:0009523	GO:GO:0009579	GO:GO:0009654	GO:GO:0009987	GO:GO:0010207	GO:GO:0010242
GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0019898	GO:GO:0042549
GO:GO:0055114	EnsemblPlants:KRH69993	ProteinID:KRH69993	ProteinID:KRH69993.1	InterPro:OMP/PagP_b-brl	PFAM:PF01716
InterPro:PSII_MSP	PANTHER:PTHR34058	PANTHER:PTHR34058:SF6	SUPFAM:SSF56925	UniParc:UPI0001B15B83	SEG:seg

Description

hypothetical protein

Coordinates

chr2:-:5550741..5553382

Molecular Weight (calculated)

34630.0 Da

IEP (calculated)

6.113

GRAVY (calculated)

-0.269

Length

326 amino acids

Sequence
(BLAST)

001: MASSLQAAAT FMQPTKFLQL KSTQAISKAF GLEPAGVNKV TCSLQADLKD LAHKCVDATK IAGFALATSA LVVSGASAEG VPKRLTFDEI QSKTYLEVKG
101: TGTANQCPTI DGGLESFAFK QGKYNAKKFC LEPTSFTVKA EGVAKNAPPE FQNTKLMTRL TYTLDEIEGP FEVSSDGTVK FEEKDGIDYA AVTVQLPGGE
201: RVPFLFTIKQ LVASGKPDSF SGEFLVPSYR GSSFLDPKGR GASTGYDNAV ALPAGGRGDE EELAKENNKS ASSSKGKITF SVTKTKPETG EVIGVFQSLQ
301: PSDTDLGAKA PKDVKIQGIW YAQLES

Best Arabidopsis Sequence Match ( AT3G50820.1 )
(BLAST)

001: MATSLQAAAT FLQPAKIAAS PSRNVHLRSN QTVGKSFGLD SSQARLTCSL HSDLKDFAGK CSDAAKIAGF ALATSALVVS GAGAEGAPKR LTYDEIQSKT
101: YMEVKGTGTA NQCPTIDGGS ETFSFKAGKY TGKKFCFEPT SFTVKADSVS KNAPPDFQNT KLMTRLTYTL DEIEGPFEVG SDGSVKFKEE DGIDYAAVTV
201: QLPGGERVPF LFTVKQLEAS GKPESFSGKF LVPSYRGSSF LDPKGRGGST GYDNAVALPA GGRGDEEELS KENVKNTAAS VGEITLKITK SKPETGEVIG
301: VFESLQPSDT DLGAKVPKDV KIQGVWYGQI E

Arabidopsis Description

PSBO2Oxygen-evolving enhancer protein 1-2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9S841]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.