CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH01631
KRH70484

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G66570.1	KRH01631	AT3G12580.1	16619024
AT5G66570.1	KRH70484	AT3G12580.1	16619024

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH69993	Soybean	mitochondrion, nucleus	93.66	95.09
KRH28553	Soybean	nucleus, plastid	92.75	93.31
KRH76911	Soybean	nucleus, plastid	92.14	92.71
VIT_00s0207g00210.t01	Wine grape	plastid	87.31	87.05
PGSC0003DMT400007189	Potato	cytosol, extracellular, plastid	83.69	84.19
Solyc02g065400.2.1	Tomato	plastid	83.38	83.89
Solyc02g090030.2.1	Tomato	plastid	83.99	83.48
PGSC0003DMT400026009	Potato	cytosol, extracellular, plastid	83.38	82.88
VIT_18s0001g11710.t01	Wine grape	plastid	82.18	82.18
Os01t0501800-01	Rice	extracellular, plastid	80.97	80.48
Zm00001d036535_P001	Maize	plastid	79.15	79.64
HORVU2Hr1G057700.2	Barley	plastid	78.85	79.57
TraesCS2B01G270300.2	Wheat	plastid	78.85	79.57
TraesCS2D01G248400.2	Wheat	plastid	78.85	79.57
CDX72613	Canola	plastid	75.83	78.68
TraesCS2A01G247300.3	Wheat	plastid	78.85	78.61
KXG20702	Sorghum	plastid	78.55	78.31
AT5G66570.1	Thale cress	plastid	77.95	77.71
AT3G50820.1	Thale cress	plastid	77.64	77.64
CDY42709	Canola	plastid	73.72	76.49
Bra017790.1-P	Field mustard	plastid	73.41	76.18
Zm00001d014564_P001	Maize	plastid	80.66	71.58
Solyc07g032640.1.1	Tomato	plastid	26.59	69.29
Solyc07g032610.1.1	Tomato	cytosol	15.71	67.53
AT4G37230.1	Thale cress	cytosol, nucleus, plastid	27.19	62.94
GSMUA_AchrUn_...	Banana	plastid	21.75	61.54
Solyc07g032620.1.1	Tomato	cytosol, nucleus, plastid	18.13	53.57

Protein Annotations

MapMan:1.1.1.2.2.1	EntrezGene:100792252	Gene3D:2.40.160.30	Gene3D:3.30.2050.10	EMBL:ACUP02010166	EnsemblPlantsGene:GLYMA_16G143600
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005509	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009523	GO:GO:0009579
GO:GO:0009654	GO:GO:0009987	GO:GO:0010207	GO:GO:0010242	GO:GO:0015979	GO:GO:0016020
GO:GO:0016021	GO:GO:0016043	GO:GO:0019898	GO:GO:0042549	GO:GO:0055114	UniProt:I1MNK0
EnsemblPlants:KRH08348	ProteinID:KRH08348	ProteinID:KRH08348.1	InterPro:OMP/PagP_b-brl	PFAM:PF01716	InterPro:PSII_MSP
PANTHER:PTHR34058	PANTHER:PTHR34058:SF6	SUPFAM:SSF56925	UniParc:UPI000233BBD9	SEG:seg	:

Description

hypothetical protein

Coordinates

chr16:-:30379885..30382483

Molecular Weight (calculated)

35060.5 Da

IEP (calculated)

7.141

GRAVY (calculated)

-0.287

Length

331 amino acids

Sequence
(BLAST)

001: MAASLQAAAT FMQPTKLSRS NTLQQKSTQS ISKAFGLEPV GAKKVTCSLQ ADLKDLAHKC VDATKIAGFA LATSALVVSG ASAEGVPKRL TFDEIQSKTY
101: LEVKGTGTAN QCPTIDGGLD SFAFKPGKYN AKKLCLEPTS FTVKAEGVAK NAPLEFQNTK LMTRLTYTLD EIEGPFEVSS DGTVKFEEKD GIDYAAVTVQ
201: LPGGERVPFL FTIKQLVASG KPDSFSGEFL VPSYRGSSFL DPKGRGASTG YDNAVALPAG GRGDEEELAK ENNKSASSSK GKITLSVTKT KPETGEVIGV
301: FESVQPSDTD LGAKAPKDVK IQGIWYAQLE S

Best Arabidopsis Sequence Match ( AT3G50820.1 )
(BLAST)

001: MATSLQAAAT FLQPAKIAAS PSRNVHLRSN QTVGKSFGLD SSQARLTCSL HSDLKDFAGK CSDAAKIAGF ALATSALVVS GAGAEGAPKR LTYDEIQSKT
101: YMEVKGTGTA NQCPTIDGGS ETFSFKAGKY TGKKFCFEPT SFTVKADSVS KNAPPDFQNT KLMTRLTYTL DEIEGPFEVG SDGSVKFKEE DGIDYAAVTV
201: QLPGGERVPF LFTVKQLEAS GKPESFSGKF LVPSYRGSSF LDPKGRGGST GYDNAVALPA GGRGDEEELS KENVKNTAAS VGEITLKITK SKPETGEVIG
301: VFESLQPSDT DLGAKVPKDV KIQGVWYGQI E

Arabidopsis Description

PSBO2Oxygen-evolving enhancer protein 1-2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9S841]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.