Factsheet for VIT_00s0207g00210.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0001g11710.t01	Wine grape	plastid	87.95	88.22
KRH69993	Soybean	mitochondrion, nucleus	86.45	88.04
KRH08348	Soybean	nucleus, plastid	87.05	87.31
KRH76911	Soybean	nucleus, plastid	86.45	87.23
KRH28553	Soybean	nucleus, plastid	86.14	86.93
Solyc02g065400.2.1	Tomato	plastid	84.64	85.41
PGSC0003DMT400007189	Potato	cytosol, extracellular, plastid	84.64	85.41
PGSC0003DMT400026009	Potato	cytosol, extracellular, plastid	85.54	85.29
Solyc02g090030.2.1	Tomato	plastid	84.34	84.08
Zm00001d036535_P001	Maize	plastid	81.63	82.37
HORVU2Hr1G057700.2	Barley	plastid	81.02	82.01
Os01t0501800-01	Rice	extracellular, plastid	82.23	81.98
TraesCS2B01G270300.2	Wheat	plastid	80.72	81.71
TraesCS2D01G248400.2	Wheat	plastid	80.72	81.71
KXG20702	Sorghum	plastid	80.72	80.72
TraesCS2A01G247300.3	Wheat	plastid	80.72	80.72
AT5G66570.1	Thale cress	plastid	79.82	79.82
AT3G50820.1	Thale cress	plastid	79.52	79.76
CDX72613	Canola	plastid	75.9	79.0
CDY42709	Canola	plastid	73.8	76.8
Bra017790.1-P	Field mustard	plastid	73.49	76.49
Zm00001d014564_P001	Maize	plastid	82.23	73.19
Solyc07g032640.1.1	Tomato	plastid	26.81	70.08
GSMUA_AchrUn_...	Banana	plastid	24.4	69.23
Solyc07g032610.1.1	Tomato	cytosol	15.66	67.53
AT4G37230.1	Thale cress	cytosol, nucleus, plastid	26.81	62.24
Solyc07g032620.1.1	Tomato	cytosol, nucleus, plastid	18.37	54.46

Protein Annotations

MapMan:1.1.1.2.2.1	EntrezGene:100245459	wikigene:100245459	Gene3D:2.40.160.30	Gene3D:3.30.2050.10	EMBL:AM472566
ProteinID:CAN61828	ProteinID:CAN61828.1	ProteinID:CCB60996	ProteinID:CCB60996.1	UniProt:F6I229	EMBL:FN596526
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005509	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009523	GO:GO:0009579
GO:GO:0009654	GO:GO:0009987	GO:GO:0010207	GO:GO:0010242	GO:GO:0015979	GO:GO:0016020
GO:GO:0016021	GO:GO:0016043	GO:GO:0019898	GO:GO:0042549	GO:GO:0055114	EntrezGene:LOC100245459
wikigene:LOC100245459	InterPro:OMP/PagP_b-brl	PFAM:PF01716	InterPro:PSII_MSP	PANTHER:PTHR34058	PANTHER:PTHR34058:SF6
SUPFAM:SSF56925	TIGR:TC54765	UniParc:UPI00015CD9D9	ArrayExpress:VIT_00s0207g00210	EnsemblPlantsGene:VIT_00s0207g00210	EnsemblPlants:VIT_00s0207g00210.t01
unigene:Vvi.72	RefSeq:XP_002274796	RefSeq:XP_002274796.1	:	:	:

Description

No Description!

Coordinates

chrUn:-:12517439..12519783

Molecular Weight (calculated)

35290.8 Da

IEP (calculated)

6.122

GRAVY (calculated)

-0.306

Length

332 amino acids

Sequence
(BLAST)

001: MAASLQAAAT LMQPTKVGVP TRTSLQLRSS QSVCKAFGLE PAGARFTCSL QADLKDLAHK CVDATKIAGF ALATSALLVS GASAEGAPKR LTYDEIQSKT
101: YMEVKGTGTA NQCPTIDGGV DSFAFKSGKY QLKKFCLEPT SFTVKAEGVS KNAPPEFQNT KLMTRLTYTL DEIEGPFEVS SDGTVKFEEK DGIDYAAVTV
201: QLPGGERVPF LFTIKQLVAS GKPDKFGGEF LVPSYRGSSF LDPKGRGGST GYDNAVALPA GGRGDEEELK KENIKDASSS TGKITLSVTK SKPETGEVIG
301: VFESIQPSDT DLGAKTPKEV KIQGFWYGQL ES

Best Arabidopsis Sequence Match ( AT3G50820.1 )
(BLAST)

001: MATSLQAAAT FLQPAKIAAS PSRNVHLRSN QTVGKSFGLD SSQARLTCSL HSDLKDFAGK CSDAAKIAGF ALATSALVVS GAGAEGAPKR LTYDEIQSKT
101: YMEVKGTGTA NQCPTIDGGS ETFSFKAGKY TGKKFCFEPT SFTVKADSVS KNAPPDFQNT KLMTRLTYTL DEIEGPFEVG SDGSVKFKEE DGIDYAAVTV
201: QLPGGERVPF LFTVKQLEAS GKPESFSGKF LVPSYRGSSF LDPKGRGGST GYDNAVALPA GGRGDEEELS KENVKNTAAS VGEITLKITK SKPETGEVIG
301: VFESLQPSDT DLGAKVPKDV KIQGVWYGQI E

Arabidopsis Description

PSBO2Oxygen-evolving enhancer protein 1-2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9S841]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.