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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 11
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:plastid
BaCelLo:plastid
ChloroP:plastid
EpiLoc:plastid
iPSORT:plastid
MultiLoc:plastid
Plant-mPloc:plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
plastid: 20363867
plastid: 28183294
nucleus: 28394025
extracellular: 29876421
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID: 20363867 doi
C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech
Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.
msms PMID: 29876421 doi
L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
msms PMID: 28183294 doi
R Tamburino, M Vitale, A Ruggiero, M Sassi, L Sannino, S Arena, A Costa, G Batelli, N Zambrano, A Scaloni, S Grillo, N Scotti
Center of Genetics Engineering (CEINGE) Biotecnologie Avanzate S.c. a R.l, via Pansini, 80100, Napoli, Italy., Department of Molecular Medicine and Medical Biotechnology, University of Naples Federico II, via Pansini, 80100, Napoli, Italy., Institute for the Animal Production System in the Mediterranean Environment, National Research Council of Italy (CNR-ISPAAM), via Argine 1085, 80147, Napoli, Italy., Institute of Biosciences and BioResources, National Research Council of Italy (CNR-IBBR), via Università 133, 80055, Portici, NA, Italy., Institute of Biosciences and BioResources, National Research Council of Italy (CNR-IBBR), via Università 133, 80055, Portici, NA, Italy. nscotti@unina.it.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400026009 Potato cytosol, extracellular, plastid 97.9 97.9
Solyc02g065400.2.1 Tomato plastid 89.49 90.58
KRH28553 Soybean nucleus, plastid 84.38 85.41
KRH69993 Soybean mitochondrion, nucleus 83.18 84.97
KRH76911 Soybean nucleus, plastid 83.78 84.8
VIT_00s0207g00210.t01 Wine grape plastid 84.08 84.34
KRH08348 Soybean nucleus, plastid 83.48 83.99
Zm00001d036535_P001 Maize plastid 80.18 81.16
TraesCS2D01G248400.2 Wheat plastid 79.88 81.1
TraesCS2B01G270300.2 Wheat plastid 79.88 81.1
HORVU2Hr1G057700.2 Barley plastid 79.88 81.1
VIT_18s0001g11710.t01 Wine grape plastid 80.48 80.97
Os01t0501800-01 Rice extracellular, plastid 80.78 80.78
TraesCS2A01G247300.3 Wheat plastid 79.88 80.12
Solyc07g032640.1.1 Tomato plastid 30.33 79.53
KXG20702 Sorghum plastid 79.28 79.52
CDY18611 Canola plastid 78.98 79.22
CDX81388 Canola plastid 78.98 79.22
Bra037164.1-P Field mustard plastid 78.98 79.22
Bra012083.1-P Field mustard plastid 78.68 78.92
Bra031813.1-P Field mustard plastid 78.68 78.92
CDY55088 Canola plastid 78.68 78.92
CDY50981 Canola plastid 78.68 78.92
CDY45242 Canola plastid 78.68 78.92
Bra038863.1-P Field mustard plastid 78.68 78.68
CDY30764 Canola plastid 78.38 78.61
Zm00001d014564_P001 Maize plastid 80.78 72.12
Solyc07g032610.1.1 Tomato cytosol 16.22 70.13
GSMUA_AchrUn_... Banana plastid 24.32 69.23
CDY26519 Canola plastid 77.48 69.17
CDY33308 Canola plastid 77.78 67.98
Solyc07g032620.1.1 Tomato cytosol, nucleus, plastid 20.12 59.82
CDX73783 Canola cytosol 23.42 58.21
Protein Annotations
MapMan:1.1.1.2.2.1Gene3D:2.40.160.30Gene3D:3.30.2050.10GO:GO:0003674GO:GO:0003824GO:GO:0005488
GO:GO:0005509GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0006091GO:GO:0008150
GO:GO:0008152GO:GO:0009523GO:GO:0009579GO:GO:0009654GO:GO:0009987GO:GO:0010207
GO:GO:0010242GO:GO:0015979GO:GO:0016020GO:GO:0016021GO:GO:0016043GO:GO:0019898
GO:GO:0042549GO:GO:0055114UniProt:K4BCF4InterPro:OMP/PagP_b-brlPFAM:PF01716InterPro:PSII_MSP
PANTHER:PTHR34058PANTHER:PTHR34058:SF6SUPFAM:SSF56925EnsemblPlantsGene:Solyc02g090030.2EnsemblPlants:Solyc02g090030.2.1UniParc:UPI0002768E6B
Description
No Description!
Coordinates
chr2:-:51698671..51700357
Molecular Weight (calculated)
35273.7 Da
IEP (calculated)
5.586
GRAVY (calculated)
-0.298
Length
333 amino acids
Sequence
(BLAST)
001: MAASLQAAAT LMQPTKVGGV SARNNLPLRS AQSLSKAFGL EPSASKLSCS LQADLKDFAQ KCTDAAKIAG FALATSALVV SGANAEGVPK RLTFDEIQSK
101: TYMEVKGTGT ANQCPTIDGG VDSFSFKPGK YNAKKFCLEP TSFTVKAEGV SKNSAPDFQK TKLMTRLTYT LDEIEGPFEV SPDGTVKFEE KDGIDYAAVT
201: VQLPGGERVP FLFTIKQLVA SGKPESFSGD FLVPSYRGSS FLDPKGRGGS TGYDNAVALP AGGRGDEEEL QKENVKNTAS LTGKITFTVT KSNPQTGEVI
301: GVFESIQPSD TDLGAKTPKD VKIQGIWYAQ LES
Best Arabidopsis Sequence Match ( AT3G50820.1 )
(BLAST)
001: MATSLQAAAT FLQPAKIAAS PSRNVHLRSN QTVGKSFGLD SSQARLTCSL HSDLKDFAGK CSDAAKIAGF ALATSALVVS GAGAEGAPKR LTYDEIQSKT
101: YMEVKGTGTA NQCPTIDGGS ETFSFKAGKY TGKKFCFEPT SFTVKADSVS KNAPPDFQNT KLMTRLTYTL DEIEGPFEVG SDGSVKFKEE DGIDYAAVTV
201: QLPGGERVPF LFTVKQLEAS GKPESFSGKF LVPSYRGSSF LDPKGRGGST GYDNAVALPA GGRGDEEELS KENVKNTAAS VGEITLKITK SKPETGEVIG
301: VFESLQPSDT DLGAKVPKDV KIQGVWYGQI E
Arabidopsis Description
PSBO2Oxygen-evolving enhancer protein 1-2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9S841]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.