Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 11
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
plastid:
20363867
plastid: 28183294 nucleus: 28394025 extracellular: 29876421 |
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID:
20363867
doi
Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.
msms PMID:
29876421
doi
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
msms PMID:
28183294
doi
Center of Genetics Engineering (CEINGE) Biotecnologie Avanzate S.c. a R.l, via Pansini, 80100, Napoli, Italy., Department of Molecular Medicine and Medical Biotechnology, University of Naples Federico II, via Pansini, 80100, Napoli, Italy., Institute for the Animal Production System in the Mediterranean Environment, National Research Council of Italy (CNR-ISPAAM), via Argine 1085, 80147, Napoli, Italy., Institute of Biosciences and BioResources, National Research Council of Italy (CNR-IBBR), via Università 133, 80055, Portici, NA, Italy., Institute of Biosciences and BioResources, National Research Council of Italy (CNR-IBBR), via Università 133, 80055, Portici, NA, Italy. nscotti@unina.it.
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
PGSC0003DMT400026009 | Potato | cytosol, extracellular, plastid | 97.9 | 97.9 |
Solyc02g065400.2.1 | Tomato | plastid | 89.49 | 90.58 |
KRH28553 | Soybean | nucleus, plastid | 84.38 | 85.41 |
KRH69993 | Soybean | mitochondrion, nucleus | 83.18 | 84.97 |
KRH76911 | Soybean | nucleus, plastid | 83.78 | 84.8 |
VIT_00s0207g00210.t01 | Wine grape | plastid | 84.08 | 84.34 |
KRH08348 | Soybean | nucleus, plastid | 83.48 | 83.99 |
Zm00001d036535_P001 | Maize | plastid | 80.18 | 81.16 |
TraesCS2D01G248400.2 | Wheat | plastid | 79.88 | 81.1 |
TraesCS2B01G270300.2 | Wheat | plastid | 79.88 | 81.1 |
HORVU2Hr1G057700.2 | Barley | plastid | 79.88 | 81.1 |
VIT_18s0001g11710.t01 | Wine grape | plastid | 80.48 | 80.97 |
Os01t0501800-01 | Rice | extracellular, plastid | 80.78 | 80.78 |
TraesCS2A01G247300.3 | Wheat | plastid | 79.88 | 80.12 |
Solyc07g032640.1.1 | Tomato | plastid | 30.33 | 79.53 |
KXG20702 | Sorghum | plastid | 79.28 | 79.52 |
CDY18611 | Canola | plastid | 78.98 | 79.22 |
CDX81388 | Canola | plastid | 78.98 | 79.22 |
Bra037164.1-P | Field mustard | plastid | 78.98 | 79.22 |
Bra012083.1-P | Field mustard | plastid | 78.68 | 78.92 |
Bra031813.1-P | Field mustard | plastid | 78.68 | 78.92 |
CDY55088 | Canola | plastid | 78.68 | 78.92 |
CDY50981 | Canola | plastid | 78.68 | 78.92 |
CDY45242 | Canola | plastid | 78.68 | 78.92 |
Bra038863.1-P | Field mustard | plastid | 78.68 | 78.68 |
CDY30764 | Canola | plastid | 78.38 | 78.61 |
Zm00001d014564_P001 | Maize | plastid | 80.78 | 72.12 |
Solyc07g032610.1.1 | Tomato | cytosol | 16.22 | 70.13 |
GSMUA_AchrUn_... | Banana | plastid | 24.32 | 69.23 |
CDY26519 | Canola | plastid | 77.48 | 69.17 |
CDY33308 | Canola | plastid | 77.78 | 67.98 |
Solyc07g032620.1.1 | Tomato | cytosol, nucleus, plastid | 20.12 | 59.82 |
CDX73783 | Canola | cytosol | 23.42 | 58.21 |
Protein Annotations
MapMan:1.1.1.2.2.1 | Gene3D:2.40.160.30 | Gene3D:3.30.2050.10 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 |
GO:GO:0005509 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0006091 | GO:GO:0008150 |
GO:GO:0008152 | GO:GO:0009523 | GO:GO:0009579 | GO:GO:0009654 | GO:GO:0009987 | GO:GO:0010207 |
GO:GO:0010242 | GO:GO:0015979 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0019898 |
GO:GO:0042549 | GO:GO:0055114 | UniProt:K4BCF4 | InterPro:OMP/PagP_b-brl | PFAM:PF01716 | InterPro:PSII_MSP |
PANTHER:PTHR34058 | PANTHER:PTHR34058:SF6 | SUPFAM:SSF56925 | EnsemblPlantsGene:Solyc02g090030.2 | EnsemblPlants:Solyc02g090030.2.1 | UniParc:UPI0002768E6B |
Description
No Description!
Coordinates
chr2:-:51698671..51700357
Molecular Weight (calculated)
35273.7 Da
IEP (calculated)
5.586
GRAVY (calculated)
-0.298
Length
333 amino acids
Sequence
(BLAST)
(BLAST)
001: MAASLQAAAT LMQPTKVGGV SARNNLPLRS AQSLSKAFGL EPSASKLSCS LQADLKDFAQ KCTDAAKIAG FALATSALVV SGANAEGVPK RLTFDEIQSK
101: TYMEVKGTGT ANQCPTIDGG VDSFSFKPGK YNAKKFCLEP TSFTVKAEGV SKNSAPDFQK TKLMTRLTYT LDEIEGPFEV SPDGTVKFEE KDGIDYAAVT
201: VQLPGGERVP FLFTIKQLVA SGKPESFSGD FLVPSYRGSS FLDPKGRGGS TGYDNAVALP AGGRGDEEEL QKENVKNTAS LTGKITFTVT KSNPQTGEVI
301: GVFESIQPSD TDLGAKTPKD VKIQGIWYAQ LES
101: TYMEVKGTGT ANQCPTIDGG VDSFSFKPGK YNAKKFCLEP TSFTVKAEGV SKNSAPDFQK TKLMTRLTYT LDEIEGPFEV SPDGTVKFEE KDGIDYAAVT
201: VQLPGGERVP FLFTIKQLVA SGKPESFSGD FLVPSYRGSS FLDPKGRGGS TGYDNAVALP AGGRGDEEEL QKENVKNTAS LTGKITFTVT KSNPQTGEVI
301: GVFESIQPSD TDLGAKTPKD VKIQGIWYAQ LES
001: MATSLQAAAT FLQPAKIAAS PSRNVHLRSN QTVGKSFGLD SSQARLTCSL HSDLKDFAGK CSDAAKIAGF ALATSALVVS GAGAEGAPKR LTYDEIQSKT
101: YMEVKGTGTA NQCPTIDGGS ETFSFKAGKY TGKKFCFEPT SFTVKADSVS KNAPPDFQNT KLMTRLTYTL DEIEGPFEVG SDGSVKFKEE DGIDYAAVTV
201: QLPGGERVPF LFTVKQLEAS GKPESFSGKF LVPSYRGSSF LDPKGRGGST GYDNAVALPA GGRGDEEELS KENVKNTAAS VGEITLKITK SKPETGEVIG
301: VFESLQPSDT DLGAKVPKDV KIQGVWYGQI E
101: YMEVKGTGTA NQCPTIDGGS ETFSFKAGKY TGKKFCFEPT SFTVKADSVS KNAPPDFQNT KLMTRLTYTL DEIEGPFEVG SDGSVKFKEE DGIDYAAVTV
201: QLPGGERVPF LFTVKQLEAS GKPESFSGKF LVPSYRGSSF LDPKGRGGST GYDNAVALPA GGRGDEEELS KENVKNTAAS VGEITLKITK SKPETGEVIG
301: VFESLQPSDT DLGAKVPKDV KIQGVWYGQI E
Arabidopsis Description
PSBO2Oxygen-evolving enhancer protein 1-2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9S841]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.