Factsheet for Zm00001d014564_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 14966246
plastid: 20089766
plastid: 22065420
plastid: 23198870

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 14966246 doi

PM Lonosky, X Zhang, VG Honavar, DL Dobbs, A Fu, SR Rodermel

Department of Genetics, Iowa State University, Ames, Iowa 50011, USA.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d010529_P001
Zm00001d012420_P001
Zm00001d028630_P005
Zm00001d038652_P003
Zm00001d042922_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G50820.1	Zm00001d038652_P003	AT5G42980.1	15352244
AT5G66570.1	Zm00001d010529_P001	AT3G12580.1	16619024
AT5G66570.1	Zm00001d012420_P001	AT3G12580.1	16619024
AT5G66570.1	Zm00001d028630_P005	AT3G12580.1	16619024
AT5G66570.1	Zm00001d042922_P002	AT3G12580.1	16619024
AT5G66570.1	Zm00001d038652_P003	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d036535_P001	Maize	plastid	85.79	97.26
KXG20702	Sorghum	plastid	84.72	95.18
TraesCS2D01G248400.2	Wheat	plastid	79.62	90.55
TraesCS2B01G270300.2	Wheat	plastid	79.62	90.55
HORVU2Hr1G057700.2	Barley	plastid	79.36	90.24
Os01t0501800-01	Rice	extracellular, plastid	80.43	90.09
TraesCS2A01G247300.3	Wheat	plastid	79.62	89.46
VIT_00s0207g00210.t01	Wine grape	plastid	73.19	82.23
PGSC0003DMT400007189	Potato	cytosol, extracellular, plastid	71.58	81.16
KRH28553	Soybean	nucleus, plastid	71.58	81.16
Solyc02g065400.2.1	Tomato	plastid	71.31	80.85
Solyc02g090030.2.1	Tomato	plastid	72.12	80.78
KRH08348	Soybean	nucleus, plastid	71.58	80.66
KRH76911	Soybean	nucleus, plastid	71.05	80.55
PGSC0003DMT400026009	Potato	cytosol, extracellular, plastid	71.85	80.48
VIT_18s0001g11710.t01	Wine grape	plastid	71.05	80.06
KRH69993	Soybean	mitochondrion, nucleus	69.71	79.75
Bra012083.1-P	Field mustard	plastid	68.63	77.11
CDY45242	Canola	plastid	68.63	77.11
Bra037164.1-P	Field mustard	plastid	68.36	76.81
AT5G66570.1	Thale cress	plastid	68.36	76.81
CDY30764	Canola	plastid	68.36	76.81
CDY18611	Canola	plastid	68.36	76.81
CDX81388	Canola	plastid	68.36	76.81
CDY55088	Canola	plastid	68.1	76.51
CDY50981	Canola	plastid	68.1	76.51
Bra031813.1-P	Field mustard	plastid	68.1	76.51
AT3G50820.1	Thale cress	plastid	67.83	76.44
Bra038863.1-P	Field mustard	plastid	67.83	75.98
CDX72613	Canola	plastid	63.81	74.61
CDY42709	Canola	plastid	62.47	73.04
Bra017790.1-P	Field mustard	plastid	62.2	72.73
GSMUA_AchrUn_...	Banana	plastid	21.18	67.52
CDY26519	Canola	plastid	66.49	66.49
Solyc07g032640.1.1	Tomato	plastid	22.52	66.14
CDY33308	Canola	plastid	66.76	65.35
Solyc07g032610.1.1	Tomato	cytosol	13.14	63.64
AT4G37230.1	Thale cress	cytosol, nucleus, plastid	23.59	61.54
CDX73783	Canola	cytosol	20.11	55.97
Solyc07g032620.1.1	Tomato	cytosol, nucleus, plastid	15.01	50.0

Protein Annotations

MapMan:1.1.1.2.2.1	Gene3D:2.40.160.30	Gene3D:3.30.2050.10	UniProt:A0A1D6GU53	ProteinID:AQK66518.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005509	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009523	GO:GO:0009579	GO:GO:0009654
GO:GO:0009987	GO:GO:0010207	GO:GO:0010242	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021
GO:GO:0016043	GO:GO:0019898	GO:GO:0042549	GO:GO:0055114	InterPro:OMP/PagP_b-brl	PFAM:PF01716
InterPro:PSII_MSP	PANTHER:PTHR34058	PANTHER:PTHR34058:SF6	SUPFAM:SSF56925	UniParc:UPI000220CEF2	EnsemblPlantsGene:Zm00001d014564
EnsemblPlants:Zm00001d014564_P001	EnsemblPlants:Zm00001d014564_T001	SEG:seg	:	:	:

Description

oxygen-evolving complex 33 kda protein bOxygen-evolving enhancer protein 1-1 chloroplastic

Coordinates

chr5:+:53469769..53471323

Molecular Weight (calculated)

39135.2 Da

IEP (calculated)

7.912

GRAVY (calculated)

-0.365

Length

373 amino acids

Sequence
(BLAST)

001: MATNSPALTK RPSRHAPTHQ TDRGEEKGQK ATPPATTTMA ASLQVQAAAT LMQPAKIGGR APSASLPSSR PSSQLARAFG VDAGAARITC SLQSDVRDVA
101: SKCVDAAKLA GFALATSALL VSGASAEGTP KRLTYDEIQS KTYLEVKGTG TANQCPTIDG GVDSFPFKPG KYQMKKLCLE PTSFTVKAEG IAKNAPPEFQ
201: KTKLMTRLTY TLDEIEGPLE VASDGTLKFE EKDGIDYAAV TVQLPGGERV PFLFTVKQLV ATGKPDSFGG PFLVPSYRGS SFLDPKGRGG STGYDNAVAL
301: PAGGRGDEEE LQKENIKNAA SSTGNITLSV TKSNPDTGEV IGVFESVQPS DTDLGAKAPK DVKIQGVWYA QLE

Best Arabidopsis Sequence Match ( AT5G66570.1 )
(BLAST)

001: MAASLQSTAT FLQSAKIATA PSRGSSHLRS TQAVGKSFGL ETSSARLTCS FQSDFKDFTG KCSDAVKIAG FALATSALVV SGASAEGAPK RLTYDEIQSK
101: TYMEVKGTGT ANQCPTIDGG SETFSFKPGK YAGKKFCFEP TSFTVKADSV SKNAPPEFQN TKLMTRLTYT LDEIEGPFEV ASDGSVNFKE EDGIDYAAVT
201: VQLPGGERVP FLFTVKQLDA SGKPDSFTGK FLVPSYRGSS FLDPKGRGGS TGYDNAVALP AGGRGDEEEL VKENVKNTAA SVGEITLKVT KSKPETGEVI
301: GVFESLQPSD TDLGAKVPKD VKIQGVWYGQ LE

Arabidopsis Description

PSBO1Oxygen-evolving enhancer protein 1-1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P23321]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.