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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 11
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:plastid
BaCelLo:plastid
ChloroP:plastid
EpiLoc:plastid
iPSORT:plastid
MultiLoc:plastid
Plant-mPloc:plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
plastid: 20363867
extracellular: 20496099
plastid: 22908117
plastid: 25431925
plastid: 26371478
plastid: 28183294
nucleus: 28394025
extracellular: 29876421
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID: 22908117 doi
C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech
Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.
msms PMID: 20363867 doi
C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech
Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.
msms PMID: 20496099 doi
D Dahal, A Pich, HP Braun, K Wydra
Institute for Plant Diseases and Plant Protection, Faculty of Natural Sciences, Leibniz Universität Hannover, Herrenhäuser Str.2, 30419 Hannover, Germany. dahal@ipp.uni-hannover.de
msms PMID: 29876421 doi
L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
msms PMID: 26371478 doi
M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi
Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.
msms PMID: 28183294 doi
R Tamburino, M Vitale, A Ruggiero, M Sassi, L Sannino, S Arena, A Costa, G Batelli, N Zambrano, A Scaloni, S Grillo, N Scotti
Center of Genetics Engineering (CEINGE) Biotecnologie Avanzate S.c. a R.l, via Pansini, 80100, Napoli, Italy., Department of Molecular Medicine and Medical Biotechnology, University of Naples Federico II, via Pansini, 80100, Napoli, Italy., Institute for the Animal Production System in the Mediterranean Environment, National Research Council of Italy (CNR-ISPAAM), via Argine 1085, 80147, Napoli, Italy., Institute of Biosciences and BioResources, National Research Council of Italy (CNR-IBBR), via Università 133, 80055, Portici, NA, Italy., Institute of Biosciences and BioResources, National Research Council of Italy (CNR-IBBR), via Università 133, 80055, Portici, NA, Italy. nscotti@unina.it.
msms PMID: 25431925 doi
S Muneer, YG Park, A Manivannan, P Soundararajan, BR Jeong
Division of Applied Life Science (BK21 Plus), Gyeongsang National University, Jinju 660-701, Korea. abinayamanivannan@gmail.com., Division of Applied Life Science (BK21 Plus), Gyeongsang National University, Jinju 660-701, Korea. brjeong@gmail.com., Division of Applied Life Science (BK21 Plus), Gyeongsang National University, Jinju 660-701, Korea. iuyiuy09@naver.com., Division of Applied Life Science (BK21 Plus), Gyeongsang National University, Jinju 660-701, Korea. prabhakaran.s.bioinfo@gmail.com., Division of Applied Life Science (BK21 Plus), Gyeongsang National University, Jinju 660-701, Korea. sobiyakhan126@gmail.com.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400007189 Potato cytosol, extracellular, plastid 99.09 99.09
Solyc02g090030.2.1 Tomato plastid 90.58 89.49
VIT_00s0207g00210.t01 Wine grape plastid 85.41 84.64
KRH28553 Soybean nucleus, plastid 84.19 84.19
KRH08348 Soybean nucleus, plastid 83.89 83.38
KRH76911 Soybean nucleus, plastid 83.28 83.28
KRH69993 Soybean mitochondrion, nucleus 82.37 83.13
VIT_18s0001g11710.t01 Wine grape plastid 83.59 83.08
Os01t0501800-01 Rice extracellular, plastid 83.59 82.58
TraesCS2D01G248400.2 Wheat plastid 81.76 82.01
TraesCS2B01G270300.2 Wheat plastid 81.76 82.01
HORVU2Hr1G057700.2 Barley plastid 81.46 81.71
Zm00001d036535_P001 Maize plastid 81.16 81.16
TraesCS2A01G247300.3 Wheat plastid 81.76 81.02
CDY55088 Canola plastid 80.24 79.52
Bra031813.1-P Field mustard plastid 80.24 79.52
KXG20702 Sorghum plastid 80.24 79.52
Bra012083.1-P Field mustard plastid 79.94 79.22
Bra037164.1-P Field mustard plastid 79.94 79.22
CDX81388 Canola plastid 79.94 79.22
CDY18611 Canola plastid 79.94 79.22
CDY45242 Canola plastid 79.94 79.22
CDY30764 Canola plastid 79.64 78.92
CDY50981 Canola plastid 79.64 78.92
Bra038863.1-P Field mustard plastid 79.33 78.38
Solyc07g032640.1.1 Tomato plastid 28.27 73.23
Zm00001d014564_P001 Maize plastid 80.85 71.31
CDY26519 Canola plastid 77.81 68.63
CDY33308 Canola plastid 78.12 67.45
Solyc07g032610.1.1 Tomato cytosol 15.5 66.23
GSMUA_AchrUn_... Banana plastid 23.4 65.81
CDX73783 Canola cytosol 24.01 58.96
Solyc07g032620.1.1 Tomato cytosol, nucleus, plastid 19.45 57.14
Protein Annotations
MapMan:1.1.1.2.2.1Gene3D:2.40.160.30Gene3D:3.30.2050.10GO:GO:0003674GO:GO:0003824GO:GO:0005488
GO:GO:0005509GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0006091
GO:GO:0008150GO:GO:0008152GO:GO:0009507GO:GO:0009523GO:GO:0009535GO:GO:0009536
GO:GO:0009579GO:GO:0009654GO:GO:0009987GO:GO:0010207GO:GO:0010242GO:GO:0015979
GO:GO:0016020GO:GO:0016021GO:GO:0016043GO:GO:0019898GO:GO:0042549GO:GO:0055114
InterPro:OMP/PagP_b-brlUniProt:P23322PFAM:PF01716InterPro:PSII_MSPPANTHER:PTHR34058PANTHER:PTHR34058:SF6
SUPFAM:SSF56925EnsemblPlantsGene:Solyc02g065400.2EnsemblPlants:Solyc02g065400.2.1UniParc:UPI000013271FEMBL:X52427EMBL:Z11999
Description
PSBOOxygen-evolving enhancer protein 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P23322]
Coordinates
chr2:+:36573934..36576914
Molecular Weight (calculated)
34949.5 Da
IEP (calculated)
5.611
GRAVY (calculated)
-0.289
Length
329 amino acids
Sequence
(BLAST)
001: MAASLQAAAT LMQPTKVGVR NNLQLRSAQS VSKAFGVEQG SGRLTCSLQT EIKELAQKCT DAAKIAGFAL ATSALVVSGA NAEGVPKRLT YDEIQSKTYM
101: EVKGTGTANQ CPTIEGGVGS FAFKPGKYTA KKFCLEPTSF TVKAEGVSKN SAPDFQKTKL MTRLTYTLDE IEGPFEVSPD GTVKFEEKDG IDYAAVTVQL
201: PGGERVPFLF TIKQLVASGK PESFSGEFLV PSYRGSSFLD PKGRGGSTGY DNAVALPAGG RGDEEELQKE NVKNTASLTG KITLSVTQSK PETGEVIGVF
301: ESIQPSDTDL GAKVPKDVKI QGIWYAQLE
Best Arabidopsis Sequence Match ( AT3G50820.1 )
(BLAST)
001: MATSLQAAAT FLQPAKIAAS PSRNVHLRSN QTVGKSFGLD SSQARLTCSL HSDLKDFAGK CSDAAKIAGF ALATSALVVS GAGAEGAPKR LTYDEIQSKT
101: YMEVKGTGTA NQCPTIDGGS ETFSFKAGKY TGKKFCFEPT SFTVKADSVS KNAPPDFQNT KLMTRLTYTL DEIEGPFEVG SDGSVKFKEE DGIDYAAVTV
201: QLPGGERVPF LFTVKQLEAS GKPESFSGKF LVPSYRGSSF LDPKGRGGST GYDNAVALPA GGRGDEEELS KENVKNTAAS VGEITLKITK SKPETGEVIG
301: VFESLQPSDT DLGAKVPKDV KIQGVWYGQI E
Arabidopsis Description
PSBO2Oxygen-evolving enhancer protein 1-2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9S841]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.