CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH01631
KRH70484

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G66570.1	KRH01631	AT3G12580.1	16619024
AT5G66570.1	KRH70484	AT3G12580.1	16619024

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH76911	Soybean	nucleus, plastid	96.96	96.96
KRH08348	Soybean	nucleus, plastid	93.31	92.75
KRH69993	Soybean	mitochondrion, nucleus	91.79	92.64
VIT_00s0207g00210.t01	Wine grape	plastid	86.93	86.14
PGSC0003DMT400007189	Potato	cytosol, extracellular, plastid	84.5	84.5
Solyc02g090030.2.1	Tomato	plastid	85.41	84.38
Solyc02g065400.2.1	Tomato	plastid	84.19	84.19
PGSC0003DMT400026009	Potato	cytosol, extracellular, plastid	85.11	84.08
VIT_18s0001g11710.t01	Wine grape	plastid	82.07	81.57
Os01t0501800-01	Rice	extracellular, plastid	82.07	81.08
HORVU2Hr1G057700.2	Barley	plastid	80.24	80.49
TraesCS2D01G248400.2	Wheat	plastid	79.94	80.18
TraesCS2B01G270300.2	Wheat	plastid	79.94	80.18
Zm00001d036535_P001	Maize	plastid	79.64	79.64
TraesCS2A01G247300.3	Wheat	plastid	79.94	79.22
KXG20702	Sorghum	plastid	79.03	78.31
AT5G66570.1	Thale cress	plastid	78.72	78.01
CDX72613	Canola	plastid	75.38	77.74
AT3G50820.1	Thale cress	plastid	77.81	77.34
CDY42709	Canola	plastid	73.25	75.55
Bra017790.1-P	Field mustard	plastid	72.95	75.24
Zm00001d014564_P001	Maize	plastid	81.16	71.58
Solyc07g032640.1.1	Tomato	plastid	26.75	69.29
GSMUA_AchrUn_...	Banana	plastid	24.62	69.23
Solyc07g032610.1.1	Tomato	cytosol	15.5	66.23
AT4G37230.1	Thale cress	cytosol, nucleus, plastid	27.66	63.64
Solyc07g032620.1.1	Tomato	cytosol, nucleus, plastid	18.24	53.57

Protein Annotations

MapMan:1.1.1.2.2.1	EntrezGene:100798485	Gene3D:2.40.160.30	Gene3D:3.30.2050.10	EMBL:ACUP02006756	EMBL:BT095172
UniProt:C6TC92	EnsemblPlantsGene:GLYMA_11G061300	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005509
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152
GO:GO:0009523	GO:GO:0009579	GO:GO:0009654	GO:GO:0009987	GO:GO:0010207	GO:GO:0010242
GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0019898	GO:GO:0042549
GO:GO:0055114	EnsemblPlants:KRH28553	ProteinID:KRH28553	ProteinID:KRH28553.1	InterPro:OMP/PagP_b-brl	PFAM:PF01716
InterPro:PSII_MSP	PANTHER:PTHR34058	PANTHER:PTHR34058:SF6	SUPFAM:SSF56925	UniParc:UPI0001B16008	SEG:seg

Description

hypothetical protein

Coordinates

chr11:+:4591202..4593257

Molecular Weight (calculated)

34780.2 Da

IEP (calculated)

5.298

GRAVY (calculated)

-0.252

Length

329 amino acids

Sequence
(BLAST)

001: MAASLQAAAT FMQPTKVGIA SRNLKSTQCI SKAFGLEPAA AKLTCSLQPD LKEFAQKCVD ATKIAGFALA TSALVVSGAS AEGVPKRLTF DEIQSKTYLE
101: VKGTGTANQC PTIEGGVDSF AFKPGKYNAQ KLCLEPTSFT VKAEGVAKNA PPEFQNTKLM TRLTYTLDEI EGPFEVTSDG TVKFEEKDGI DYAAVTVQLP
201: GGERVPFLFT IKQLVASGKP DSFSGEFLVP SYRGSSFLDP KGRGASTGYD NAVALPAGGR GDEEELAKEN NKSASSSKGK ITLSVTKTKP ETGEVIGVFE
301: SVQPSDTDLG AKAPKDVKIQ GIWYAQLDS

Best Arabidopsis Sequence Match ( AT5G66570.1 )
(BLAST)

001: MAASLQSTAT FLQSAKIATA PSRGSSHLRS TQAVGKSFGL ETSSARLTCS FQSDFKDFTG KCSDAVKIAG FALATSALVV SGASAEGAPK RLTYDEIQSK
101: TYMEVKGTGT ANQCPTIDGG SETFSFKPGK YAGKKFCFEP TSFTVKADSV SKNAPPEFQN TKLMTRLTYT LDEIEGPFEV ASDGSVNFKE EDGIDYAAVT
201: VQLPGGERVP FLFTVKQLDA SGKPDSFTGK FLVPSYRGSS FLDPKGRGGS TGYDNAVALP AGGRGDEEEL VKENVKNTAA SVGEITLKVT KSKPETGEVI
301: GVFESLQPSD TDLGAKVPKD VKIQGVWYGQ LE

Arabidopsis Description

PSBO1Oxygen-evolving enhancer protein 1-1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P23321]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.