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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, extracellular

Predictor Summary:
  • plastid 10
Predictors GFP MS/MS Papers
Winner Takes All:extracellular, plastid
Any Predictor:plastid
BaCelLo:plastid
EpiLoc:plastid
iPSORT:plastid
MultiLoc:plastid
Plant-mPloc:plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
nucleus: 19621931
plastid: 21433289
extracellular: 23159799
extracellular: 25047395
plastid: 27126603
plasma membrane: 27800704
extracellular: 28232208
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID: 25047395 doi
JY Kim, J Wu, SJ Kwon, H Oh, SE Lee, SG Kim, Y Wang, GK Agrawal, R Rakwal, KY Kang, IP Ahn, BG Kim, ST Kim
Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang, South Korea.
msms PMID: 23159799 doi
SG Kim, Y Wang, KH Lee, ZY Park, J Park, J Wu, SJ Kwon, YH Lee, GK Agrawal, R Rakwal, ST Kim, KY Kang
Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, Jinju, 660-701, South Korea.
msms PMID: 21433289 doi
S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky
Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.
msms PMID: 19621931 doi
T Aki, S Yanagisawa
Department of Applied Biological Chemistry, The University of Tokyo, Japan.
msms PMID: 27126603 doi
Y Wang, K Ji, S Shen, H Chen
Key Laboratory of Research and Development for Resource Plant, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China., Key Laboratory of Research and Development for Resource Plant, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China. Electronic address: chenh@ibcas.ac.cn., Key Laboratory of Research and Development for Resource Plant, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China; University of Chinese Academy of Sciences, Beijing 100049, China.
msms PMID: 28232208 doi
Y Wang, R Gupta, W Song, HH Huh, SE Lee, J Wu, GK Agrawal, R Rakwal, KY Kang, SR Park, ST Kim
Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea., Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea. Electronic address: stkim71@pusan.ac.kr., Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju, South Korea., National Academy of Agricultural Science, Rural Development Administration, Suwon 441-707, South Korea. Electronic address: srpark@korea.kr., Plant Proteomics Group, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal; Faculty of Health and Sport Sciences, Tsukuba International Academy for Sport Studies (TIAS), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, 305-8574, Ibaraki, Japan.
PPI

Inferred distinct locusB in Crop

Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS2D01G248400.2 Wheat plastid 90.39 91.77
TraesCS2B01G270300.2 Wheat plastid 90.39 91.77
HORVU2Hr1G057700.2 Barley plastid 89.79 91.16
TraesCS2A01G247300.3 Wheat plastid 90.39 90.66
KXG20702 Sorghum plastid 90.39 90.66
Zm00001d036535_P001 Maize plastid 89.49 90.58
PGSC0003DMT400007189 Potato cytosol, extracellular, plastid 82.88 83.89
Solyc02g065400.2.1 Tomato plastid 82.58 83.59
VIT_00s0207g00210.t01 Wine grape plastid 81.98 82.23
VIT_18s0001g11710.t01 Wine grape plastid 81.68 82.18
KRH28553 Soybean nucleus, plastid 81.08 82.07
PGSC0003DMT400026009 Potato cytosol, extracellular, plastid 81.68 81.68
KRH76911 Soybean nucleus, plastid 80.48 81.46
KRH08348 Soybean nucleus, plastid 80.48 80.97
Solyc02g090030.2.1 Tomato plastid 80.78 80.78
KRH69993 Soybean mitochondrion, nucleus 78.98 80.67
Zm00001d014564_P001 Maize plastid 90.09 80.43
Bra012083.1-P Field mustard plastid 76.88 77.11
CDY45242 Canola plastid 76.88 77.11
AT3G50820.1 Thale cress plastid 76.58 77.04
Bra037164.1-P Field mustard plastid 76.28 76.51
CDY30764 Canola plastid 76.28 76.51
CDY18611 Canola plastid 76.28 76.51
CDX81388 Canola plastid 76.28 76.51
Bra031813.1-P Field mustard plastid 75.98 76.2
CDY55088 Canola plastid 75.98 76.2
CDY50981 Canola plastid 75.98 76.2
AT5G66570.1 Thale cress plastid 75.68 75.9
CDX72613 Canola plastid 72.07 75.24
Bra038863.1-P Field mustard plastid 75.08 75.08
CDY42709 Canola plastid 70.57 73.67
Bra017790.1-P Field mustard plastid 70.27 73.35
Solyc07g032640.1.1 Tomato plastid 25.83 67.72
GSMUA_AchrUn_... Banana plastid 23.72 67.52
Solyc07g032610.1.1 Tomato cytosol 15.32 66.23
CDY26519 Canola plastid 73.57 65.68
CDY33308 Canola plastid 73.87 64.57
AT4G37230.1 Thale cress cytosol, nucleus, plastid 26.73 62.24
CDX73783 Canola cytosol 22.22 55.22
Solyc07g032620.1.1 Tomato cytosol, nucleus, plastid 17.72 52.68
Protein Annotations
MapMan:1.1.1.2.2.1Gene3D:2.40.160.30Gene3D:3.30.2050.10EntrezGene:4324479EMBL:AK103920EMBL:AK104080
EMBL:AK104649EMBL:AK104760EMBL:AK119188ProteinID:BAB64069.1ProteinID:BAF05048.1ProteinID:BAS72321.1
ProteinID:EAZ12041.1GO:GO:0003674GO:GO:0003824GO:GO:0005488GO:GO:0005509GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0006091GO:GO:0008150GO:GO:0008152GO:GO:0009523
GO:GO:0009579GO:GO:0009654GO:GO:0009987GO:GO:0010207GO:GO:0010242GO:GO:0015979
GO:GO:0016020GO:GO:0016043GO:GO:0019898GO:GO:0042549GO:GO:0055114InterPro:OMP/PagP_b-brl
EnsemblPlantsGene:Os01g0501800EnsemblPlants:Os01t0501800-01PFAM:PF01716InterPro:PSII_MSPPANTHER:PTHR34058PANTHER:PTHR34058:SF6
UniProt:Q943W1SUPFAM:SSF56925UniParc:UPI00000A0F46RefSeq:XP_015618593.1SEG:seg:
Description
PHOTOSYSTEM II SUBUNITSimilar to Photosystem II oxygen-evolving complex protein 1 (Fragment). (Os01t0501800-01)
Coordinates
chr1:+:17349338..17350785
Molecular Weight (calculated)
34863.3 Da
IEP (calculated)
6.116
GRAVY (calculated)
-0.216
Length
333 amino acids
Sequence
(BLAST)
001: MAASLQAAAT LMQPAKLGGR ASSAALPSRP SSHVARAFGV DTGAAGRITC SLQSDIREVA NKCADAAKLA GFALATSALL VSGASAEGVP RRLTFDEIQS
101: KTYMEVKGTG TANQCPTVEG GVDSFAFKAG KYNMKKFCLE PTSFTVKAEG VAKNAPPEFQ KTKLMTRLTY TLDEIEGPLE VSSDGTIKFE EKDGIDYAAV
201: TVQLPGGERV PFLFTIKNLV ATGKPESFGG PFLVPSYRGS SFLDPKGRGG STGYDNAVAL PAGGRGDEEE LAKENVKNAS SSTGNITLSV TKSKPETGEV
301: IGVFESVQPS DTDLGAKVPK DVKIQGVWYA QLE
Best Arabidopsis Sequence Match ( AT3G50820.1 )
(BLAST)
001: MATSLQAAAT FLQPAKIAAS PSRNVHLRSN QTVGKSFGLD SSQARLTCSL HSDLKDFAGK CSDAAKIAGF ALATSALVVS GAGAEGAPKR LTYDEIQSKT
101: YMEVKGTGTA NQCPTIDGGS ETFSFKAGKY TGKKFCFEPT SFTVKADSVS KNAPPDFQNT KLMTRLTYTL DEIEGPFEVG SDGSVKFKEE DGIDYAAVTV
201: QLPGGERVPF LFTVKQLEAS GKPESFSGKF LVPSYRGSSF LDPKGRGGST GYDNAVALPA GGRGDEEELS KENVKNTAAS VGEITLKITK SKPETGEVIG
301: VFESLQPSDT DLGAKVPKDV KIQGVWYGQI E
Arabidopsis Description
PSBO2Oxygen-evolving enhancer protein 1-2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9S841]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.