Subcellular Localization
min:
: max
Winner_takes_all: plastid, extracellular
Predictor Summary:
Predictor Summary:
- plastid 10
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
nucleus:
19621931
plastid: 21433289 extracellular: 23159799 extracellular: 25047395 plastid: 27126603 plasma membrane: 27800704 extracellular: 28232208 |
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID:
25047395
doi
Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang, South Korea.
msms PMID:
23159799
doi
Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, Jinju, 660-701, South Korea.
msms PMID:
21433289
doi
Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.
msms PMID:
27126603
doi
Key Laboratory of Research and Development for Resource Plant, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China., Key Laboratory of Research and Development for Resource Plant, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China. Electronic address: chenh@ibcas.ac.cn., Key Laboratory of Research and Development for Resource Plant, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China; University of Chinese Academy of Sciences, Beijing 100049, China.
msms PMID:
28232208
doi
Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea., Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea. Electronic address: stkim71@pusan.ac.kr., Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju, South Korea., National Academy of Agricultural Science, Rural Development Administration, Suwon 441-707, South Korea. Electronic address: srpark@korea.kr., Plant Proteomics Group, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal; Faculty of Health and Sport Sciences, Tsukuba International Academy for Sport Studies (TIAS), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, 305-8574, Ibaraki, Japan.
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
Os01t0840100-01 | |
Os03t0276500-01 | |
Os05t0460000-01 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT5G66570.1 | Os01t0840100-01 | AT3G12580.1 | 16619024 |
AT5G66570.1 | Os03t0276500-01 | AT3G12580.1 | 16619024 |
AT5G66570.1 | Os05t0460000-01 | AT3G12580.1 | 16619024 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS2D01G248400.2 | Wheat | plastid | 90.39 | 91.77 |
TraesCS2B01G270300.2 | Wheat | plastid | 90.39 | 91.77 |
HORVU2Hr1G057700.2 | Barley | plastid | 89.79 | 91.16 |
TraesCS2A01G247300.3 | Wheat | plastid | 90.39 | 90.66 |
KXG20702 | Sorghum | plastid | 90.39 | 90.66 |
Zm00001d036535_P001 | Maize | plastid | 89.49 | 90.58 |
PGSC0003DMT400007189 | Potato | cytosol, extracellular, plastid | 82.88 | 83.89 |
Solyc02g065400.2.1 | Tomato | plastid | 82.58 | 83.59 |
VIT_00s0207g00210.t01 | Wine grape | plastid | 81.98 | 82.23 |
VIT_18s0001g11710.t01 | Wine grape | plastid | 81.68 | 82.18 |
KRH28553 | Soybean | nucleus, plastid | 81.08 | 82.07 |
PGSC0003DMT400026009 | Potato | cytosol, extracellular, plastid | 81.68 | 81.68 |
KRH76911 | Soybean | nucleus, plastid | 80.48 | 81.46 |
KRH08348 | Soybean | nucleus, plastid | 80.48 | 80.97 |
Solyc02g090030.2.1 | Tomato | plastid | 80.78 | 80.78 |
KRH69993 | Soybean | mitochondrion, nucleus | 78.98 | 80.67 |
Zm00001d014564_P001 | Maize | plastid | 90.09 | 80.43 |
Bra012083.1-P | Field mustard | plastid | 76.88 | 77.11 |
CDY45242 | Canola | plastid | 76.88 | 77.11 |
AT3G50820.1 | Thale cress | plastid | 76.58 | 77.04 |
Bra037164.1-P | Field mustard | plastid | 76.28 | 76.51 |
CDY30764 | Canola | plastid | 76.28 | 76.51 |
CDY18611 | Canola | plastid | 76.28 | 76.51 |
CDX81388 | Canola | plastid | 76.28 | 76.51 |
Bra031813.1-P | Field mustard | plastid | 75.98 | 76.2 |
CDY55088 | Canola | plastid | 75.98 | 76.2 |
CDY50981 | Canola | plastid | 75.98 | 76.2 |
AT5G66570.1 | Thale cress | plastid | 75.68 | 75.9 |
CDX72613 | Canola | plastid | 72.07 | 75.24 |
Bra038863.1-P | Field mustard | plastid | 75.08 | 75.08 |
CDY42709 | Canola | plastid | 70.57 | 73.67 |
Bra017790.1-P | Field mustard | plastid | 70.27 | 73.35 |
Solyc07g032640.1.1 | Tomato | plastid | 25.83 | 67.72 |
GSMUA_AchrUn_... | Banana | plastid | 23.72 | 67.52 |
Solyc07g032610.1.1 | Tomato | cytosol | 15.32 | 66.23 |
CDY26519 | Canola | plastid | 73.57 | 65.68 |
CDY33308 | Canola | plastid | 73.87 | 64.57 |
AT4G37230.1 | Thale cress | cytosol, nucleus, plastid | 26.73 | 62.24 |
CDX73783 | Canola | cytosol | 22.22 | 55.22 |
Solyc07g032620.1.1 | Tomato | cytosol, nucleus, plastid | 17.72 | 52.68 |
Protein Annotations
MapMan:1.1.1.2.2.1 | Gene3D:2.40.160.30 | Gene3D:3.30.2050.10 | EntrezGene:4324479 | EMBL:AK103920 | EMBL:AK104080 |
EMBL:AK104649 | EMBL:AK104760 | EMBL:AK119188 | ProteinID:BAB64069.1 | ProteinID:BAF05048.1 | ProteinID:BAS72321.1 |
ProteinID:EAZ12041.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005509 | GO:GO:0005575 |
GO:GO:0005622 | GO:GO:0005623 | GO:GO:0006091 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009523 |
GO:GO:0009579 | GO:GO:0009654 | GO:GO:0009987 | GO:GO:0010207 | GO:GO:0010242 | GO:GO:0015979 |
GO:GO:0016020 | GO:GO:0016043 | GO:GO:0019898 | GO:GO:0042549 | GO:GO:0055114 | InterPro:OMP/PagP_b-brl |
EnsemblPlantsGene:Os01g0501800 | EnsemblPlants:Os01t0501800-01 | PFAM:PF01716 | InterPro:PSII_MSP | PANTHER:PTHR34058 | PANTHER:PTHR34058:SF6 |
UniProt:Q943W1 | SUPFAM:SSF56925 | UniParc:UPI00000A0F46 | RefSeq:XP_015618593.1 | SEG:seg | : |
Description
PHOTOSYSTEM II SUBUNITSimilar to Photosystem II oxygen-evolving complex protein 1 (Fragment). (Os01t0501800-01)
Coordinates
chr1:+:17349338..17350785
Molecular Weight (calculated)
34863.3 Da
IEP (calculated)
6.116
GRAVY (calculated)
-0.216
Length
333 amino acids
Sequence
(BLAST)
(BLAST)
001: MAASLQAAAT LMQPAKLGGR ASSAALPSRP SSHVARAFGV DTGAAGRITC SLQSDIREVA NKCADAAKLA GFALATSALL VSGASAEGVP RRLTFDEIQS
101: KTYMEVKGTG TANQCPTVEG GVDSFAFKAG KYNMKKFCLE PTSFTVKAEG VAKNAPPEFQ KTKLMTRLTY TLDEIEGPLE VSSDGTIKFE EKDGIDYAAV
201: TVQLPGGERV PFLFTIKNLV ATGKPESFGG PFLVPSYRGS SFLDPKGRGG STGYDNAVAL PAGGRGDEEE LAKENVKNAS SSTGNITLSV TKSKPETGEV
301: IGVFESVQPS DTDLGAKVPK DVKIQGVWYA QLE
101: KTYMEVKGTG TANQCPTVEG GVDSFAFKAG KYNMKKFCLE PTSFTVKAEG VAKNAPPEFQ KTKLMTRLTY TLDEIEGPLE VSSDGTIKFE EKDGIDYAAV
201: TVQLPGGERV PFLFTIKNLV ATGKPESFGG PFLVPSYRGS SFLDPKGRGG STGYDNAVAL PAGGRGDEEE LAKENVKNAS SSTGNITLSV TKSKPETGEV
301: IGVFESVQPS DTDLGAKVPK DVKIQGVWYA QLE
001: MATSLQAAAT FLQPAKIAAS PSRNVHLRSN QTVGKSFGLD SSQARLTCSL HSDLKDFAGK CSDAAKIAGF ALATSALVVS GAGAEGAPKR LTYDEIQSKT
101: YMEVKGTGTA NQCPTIDGGS ETFSFKAGKY TGKKFCFEPT SFTVKADSVS KNAPPDFQNT KLMTRLTYTL DEIEGPFEVG SDGSVKFKEE DGIDYAAVTV
201: QLPGGERVPF LFTVKQLEAS GKPESFSGKF LVPSYRGSSF LDPKGRGGST GYDNAVALPA GGRGDEEELS KENVKNTAAS VGEITLKITK SKPETGEVIG
301: VFESLQPSDT DLGAKVPKDV KIQGVWYGQI E
101: YMEVKGTGTA NQCPTIDGGS ETFSFKAGKY TGKKFCFEPT SFTVKADSVS KNAPPDFQNT KLMTRLTYTL DEIEGPFEVG SDGSVKFKEE DGIDYAAVTV
201: QLPGGERVPF LFTVKQLEAS GKPESFSGKF LVPSYRGSSF LDPKGRGGST GYDNAVALPA GGRGDEEELS KENVKNTAAS VGEITLKITK SKPETGEVIG
301: VFESLQPSDT DLGAKVPKDV KIQGVWYGQI E
Arabidopsis Description
PSBO2Oxygen-evolving enhancer protein 1-2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9S841]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.