CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY55088	Canola	plastid	69.4	28.01
CDX81388	Canola	plastid	68.66	27.71
CDY50981	Canola	plastid	68.66	27.71
CDY30764	Canola	plastid	67.91	27.41
CDY45242	Canola	plastid	67.91	27.41
CDY18611	Canola	plastid	67.91	27.41
CDY26519	Canola	plastid	70.15	25.2
CDY33308	Canola	plastid	70.15	24.67
PGSC0003DMT400007189	Potato	cytosol, extracellular, plastid	58.96	24.01
Solyc02g065400.2.1	Tomato	plastid	58.96	24.01
CDX72613	Canola	plastid	56.72	23.82
CDY42709	Canola	plastid	55.97	23.51
PGSC0003DMT400026009	Potato	cytosol, extracellular, plastid	58.21	23.42
Solyc02g090030.2.1	Tomato	plastid	58.21	23.42
KXG20702	Sorghum	plastid	57.46	23.19
HORVU2Hr1G057700.2	Barley	plastid	56.72	23.17
TraesCS2D01G248400.2	Wheat	plastid	56.72	23.17
TraesCS2B01G270300.2	Wheat	plastid	56.72	23.17
Zm00001d036535_P001	Maize	plastid	56.72	23.1
TraesCS2A01G247300.3	Wheat	plastid	56.72	22.89
Os01t0501800-01	Rice	extracellular, plastid	55.22	22.22
Zm00001d014564_P001	Maize	plastid	55.97	20.11
Solyc07g032640.1.1	Tomato	plastid	2.24	2.36
Solyc07g032620.1.1	Tomato	cytosol, nucleus, plastid	0.75	0.89
Solyc07g032610.1.1	Tomato	cytosol	0.0	0.0
GSMUA_AchrUn_...	Banana	plastid	0.0	0.0

Protein Annotations

Gene3D:2.40.160.30	Gene3D:3.30.2050.10	MapMan:35.1	GO:A0A078CFI5	EnsemblPlants:CDX73783	ProteinID:CDX73783
ProteinID:CDX73783.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009579	GO:GO:0009654	GO:GO:0009987
GO:GO:0010207	GO:GO:0010242	GO:GO:0015979	GO:GO:0016020	GO:GO:0016043	GO:GO:0042549
EnsemblPlantsGene:GSBRNA2T00109402001	InterPro:OMP/PagP_b-brl	PFAM:PF01716	InterPro:PSII_MSP	PANTHER:PTHR34058	PANTHER:PTHR34058:SF6
SUPFAM:SSF56925	UniParc:UPI0004EF43B9	:	:	:	:

Description

BnaC08g22200D

Coordinates

chrLK031799:+:2726442..2726999

Molecular Weight (calculated)

14512.6 Da

IEP (calculated)

4.445

GRAVY (calculated)

-0.843

Length

134 amino acids

Sequence
(BLAST)

001: MNIPPDFKNT KLKTCLTYTL DDEIEGPFEV GSDGSVILKE EDEIVKQLEA SGKPNNDSGK FFVPSYPKGH GGSTGYGNTV ALLGGGRGDE EVLSKENVKN
101: TAASVEERSL EDHKEQTGDR GSDRSVRESL TAQY

Best Arabidopsis Sequence Match ( AT3G50820.1 )
(BLAST)

001: MATSLQAAAT FLQPAKIAAS PSRNVHLRSN QTVGKSFGLD SSQARLTCSL HSDLKDFAGK CSDAAKIAGF ALATSALVVS GAGAEGAPKR LTYDEIQSKT
101: YMEVKGTGTA NQCPTIDGGS ETFSFKAGKY TGKKFCFEPT SFTVKADSVS KNAPPDFQNT KLMTRLTYTL DEIEGPFEVG SDGSVKFKEE DGIDYAAVTV
201: QLPGGERVPF LFTVKQLEAS GKPESFSGKF LVPSYRGSSF LDPKGRGGST GYDNAVALPA GGRGDEEELS KENVKNTAAS VGEITLKITK SKPETGEVIG
301: VFESLQPSDT DLGAKVPKDV KIQGVWYGQI E

Arabidopsis Description

PSBO2Oxygen-evolving enhancer protein 1-2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9S841]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.