Factsheet for TraesCS5D01G258800.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G247300.3
TraesCS2B01G270300.2
TraesCS2D01G248400.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G56010.1	TraesCS2A01G247300.3	AT5G66570.1	16619024
AT5G56010.1	TraesCS2B01G270300.2	AT5G66570.1	16619024
AT5G56010.1	TraesCS2D01G248400.2	AT5G66570.1	16619024

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY11962	Canola	cytosol	1.2	2.07
CDY36775	Canola	cytosol	1.2	2.04
CDY36771	Canola	cytosol	1.2	2.04
TraesCS5D01G258900.2	Wheat	plastid	4.8	1.54
TraesCS6D01G046900.1	Wheat	cytosol	0.8	1.04
TraesCS5D01G113700.1	Wheat	mitochondrion, plastid	2.4	0.63
TraesCS2D01G033200.2	Wheat	golgi	1.6	0.56
CDY11921	Canola	cytosol	1.2	0.56
CDY64982	Canola	cytosol	1.2	0.55
CDY20742	Canola	cytosol	1.2	0.54
GSMUA_Achr9P12680_001	Banana	cytosol	1.2	0.54
Bra035599.1-P	Field mustard	cytosol	1.2	0.53
GSMUA_Achr3P04010_001	Banana	cytosol	1.2	0.53
CDY06551	Canola	cytosol	1.2	0.52
CDY36807	Canola	cytosol	1.2	0.52
CDY11967	Canola	cytosol	1.2	0.52
GSMUA_Achr11P...	Banana	cytosol	1.2	0.52
GSMUA_Achr3P10970_001	Banana	cytosol, plasma membrane	1.2	0.51
GSMUA_Achr10P...	Banana	cytosol, plasma membrane, unclear	1.2	0.48
Bra035593.1-P	Field mustard	cytosol	1.2	0.45
Bra028948.1-P	Field mustard	cytosol	1.2	0.43
Solyc07g065840.2.1	Tomato	nucleus, plastid	1.2	0.43
Solyc12g015880.1.1	Tomato	nucleus	1.2	0.43
AT5G56000.1	Thale cress	cytosol	1.2	0.43
Bra028952.1-P	Field mustard	cytosol	1.2	0.43
Bra028924.1-P	Field mustard	cytosol	1.2	0.43
AT5G56010.1	Thale cress	cytosol	1.2	0.43
AT5G56030.2	Thale cress	cytosol	1.2	0.41
Zm00001d006008_P001	Maize	plastid	0.8	0.29
EER99075	Sorghum	cytosol	0.8	0.29
EER96954	Sorghum	cytosol	0.8	0.29
TraesCS5D01G268000.1	Wheat	cytosol	0.8	0.29
TraesCS7D01G241100.1	Wheat	golgi	0.8	0.29
TraesCS7D01G517800.1	Wheat	golgi, plastid	0.8	0.24
KRH33083	Soybean	cytosol	0.0	0.0
Os09t0534600-01	Rice	endoplasmic reticulum, golgi, plasma membrane	0.0	0.0
PGSC0003DMT400014812	Potato	cytosol	0.0	0.0
KRH05319	Soybean	endoplasmic reticulum	0.0	0.0
CDY36776	Canola	cytosol	0.0	0.0
CDY36772	Canola	cytosol	0.0	0.0
CDY22598	Canola	cytosol	0.0	0.0
VIT_05s0062g00690.t01	Wine grape	cytosol	0.0	0.0
CDY11961	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:TraesCS5D01G258800.1

EnsemblPlantsGene:TraesCS5D01G258800

PANTHER:PTHR44004

SEG:seg

MapMan:35.2

Description

No Description!

Coordinates

chr5D:-:365120867..365122329

Molecular Weight (calculated)

27328.9 Da

IEP (calculated)

6.586

GRAVY (calculated)

0.052

Length

250 amino acids

Sequence
(BLAST)

001: MLHAIESNAP DISTVDLELG DQVDFSLSLG DGSSQVKQLR ITPASPSYAL GKLPSITPGV EVLDILLLPH EVSTPMVPGK FQHLKYLNIS LPAVSAADEY
101: DYLSLLAFLD ASPALETLVL SSASIMNCVN RGYGRIHRDV SHLARAQEFR HGSLKNVTIY SFYSAESMIE LTCRMLKHTA SLECLTLDTT HGYSRCSSCR
201: SGRCFPMDAR DVLQAQKSLV AIRRYIKPEV PCNVNLIVVE PCSSCHASAN

Best Arabidopsis Sequence Match ( AT5G38850.1 )
(BLAST)

001: MASARTWRYN VFPSFHGGDI RKTFLSHLRK QFNSNGITMF DDQGIERSQT IAPALIQAIR ESRISIVVLS KNYASSSWCL NELVEILKCK DVVMPIFYEV
101: DPSDVRKQTG DFGKAFKNSC KSKTKEERQR WIQALIFVGN IAGEHSLKWE NEADMIEKIA KDVSDKLNAT PSKDFDAFVG LEFHIRELSS LLYLDYEQVR
201: IVGICGPAGI GKTTIARALQ SLLSSNFQRS CFMENVRGSL NIGLDEYGLK LDLQERLLSK IMNQKGMRIE HLGTIRDRLH DQKVLIILDD VNDLDLYALA
301: DQTTWFGPGS RIIVTTEDNE LLQKHDINNV YHVDFPSRKE ALEIFCRCAF RQSSAPDTIL KLAERVTELC GNLPLGLCVI GSSLHGKTED EWEILIRRLE
401: ISLDRDNEAQ LRVGYDSLHE NEQALFLSIA VFFNYKDRQL VMAMLLDSNL DVEYGLRTLA NKSLIHISRN EKIVMHNLLQ HVGRQAIQRQ EPWKRHILID
501: ADEICNVLEN DTDARIVSGI SFDISRIGEV FLSERAFKRL CNLQFLRVFK TGYDEKNRVR IPENMEFPPR LRLLQWEAYP RRSLSLKLNL EYLVELDMEG
601: SLLEKLWDGT QPLANLKKMS LSSSWYLKKL PDLSNATNLE ELDLRACQNL VELPSSFSYL HKLKYLNMMG CRRLKEVPPH INLKSLELVN MYGCSRLKSF
701: PDISTNISSL DISYTDVEEL PESMTMWSRL RTLEIYKSRN LKIVTHVPLN LTYLDLSETR IEKIPDDIKN VHGLQILFLG GCRKLASLPE LPGSLLYLSA
801: NECESLESVS CPFNTSYMEL SFTNCFKLNQ EARRGIIQQS FSHGWASLPG RELPTDLYHR STGHSITVRL EGKTPFSAFF GFKVFLVISP NHDAEETSNS
901: PLFCPRIGKI GCSDDETPIY IIPKPRAEHL VMFHSDLHNK EKCHEVGNEI LFEFSNISDT YEIIECGVRF YTDEQVKSVK GEMNMK

Arabidopsis Description

Disease resistance protein (TIR-NBS-LRR class) [Source:UniProtKB/TrEMBL;Acc:Q9FMB7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.