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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 2
  • cytosol 4
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, nucleus, secretory
BaCelLo:nucleus
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:cytosol
PProwler:secretory
WoLF PSORT:nucleus
YLoc:cytosol
 plastid: 21433289
nucleus: 23777608
nucleus: 26035336
extracellular: 26072143
plasma membrane: 27800704
plastid: 27992503
plasma membrane: 28056797
msms PMID: 26072143 doi
B Du, Z Wei, Z Wang, X Wang, X Peng, B Du, R Chen, L Zhu, G He
State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, 430072, China., State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, 430072, China. Electronic address: gche@whu.edu.cn.
msms PMID: 23777608 doi
H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID: 26035336 doi
M Li, X Yin, K Sakata, P Yang, S Komatsu
§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.
msms PMID: 28056797 doi
N Yang, T Wang
Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.
msms PMID: 27992503 doi
S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
msms PMID: 21433289 doi
S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky
Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.
PPI

Inferred distinct locusB in Crop

locusBlocations
Os01t0501800-01

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G56010.1 Os01t0501800-01 AT5G66570.1 16619024
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Os09t0482600-01 Rice cytosol 99.86 99.86
Os09t0482400-01 Rice nucleus 99.86 99.86
EER96954 Sorghum cytosol 96.71 96.71
EER99075 Sorghum cytosol 96.42 96.42
Zm00001d006008_P001 Maize plastid 95.99 96.13
GSMUA_Achr9P12680_001 Banana cytosol 75.39 94.44
GSMUA_Achr3P04010_001 Banana cytosol 75.68 93.96
GSMUA_Achr10P... Banana cytosol, plasma membrane, unclear 83.55 93.44
Os08t0500700-01 Rice extracellular, plasma membrane, vacuole 92.13 92.8
GSMUA_Achr3P10970_001 Banana cytosol, plasma membrane 77.97 92.37
GSMUA_Achr11P... Banana cytosol 76.11 92.2
Solyc12g015880.1.1 Tomato nucleus 91.7 91.7
Solyc07g065840.2.1 Tomato nucleus, plastid 91.56 91.56
Bra035593.1-P Field mustard cytosol 87.55 91.07
Bra035599.1-P Field mustard cytosol 73.1 90.76
AT5G56010.1 Thale cress cytosol 90.7 90.7
Bra028924.1-P Field mustard cytosol 90.7 90.7
Bra028952.1-P Field mustard cytosol 90.27 90.27
Bra028948.1-P Field mustard cytosol 89.84 89.97
CDY11961 Canola cytosol 46.78 89.84
CDY22598 Canola cytosol 60.94 89.68
AT5G56000.1 Thale cress cytosol 89.56 89.56
CDY11967 Canola cytosol 73.68 89.41
AT5G56030.2 Thale cress cytosol 90.99 87.36
KRH33083 Soybean cytosol 34.76 86.48
CDY20742 Canola cytosol 67.67 85.84
CDY36807 Canola cytosol 70.53 85.74
CDY36771 Canola cytosol 18.03 85.71
CDY64982 Canola cytosol 67.24 85.61
CDY06551 Canola cytosol 70.1 85.51
Os04t0107900-02 Rice cytosol 30.33 85.14
CDY36775 Canola cytosol 17.88 85.03
CDY11921 Canola cytosol 65.24 84.92
CDY11962 Canola cytosol 17.31 83.45
CDY36776 Canola cytosol 43.06 82.92
CDY36772 Canola cytosol 43.06 82.92
KRH05319 Soybean endoplasmic reticulum 34.62 74.92
PGSC0003DMT400014812 Potato cytosol 23.03 67.08
Os06t0716700-02 Rice plasma membrane 50.36 43.35
VIT_05s0062g00690.t01 Wine grape cytosol 14.88 42.98
Os09t0474300-01 Rice plastid 35.34 37.77
Os12t0514500-01 Rice mitochondrion 41.77 36.0
Os09t0534600-01 Rice endoplasmic reticulum, golgi, plasma membrane 14.88 24.13
Protein Annotations
Gene3D:1.20.120.790MapMan:19.1.6.1Gene3D:3.30.230.80Gene3D:3.30.565.10Gene3D:3.30.70.2140Gene3D:3.40.50.11260
EntrezGene:4347402EMBL:AB111810ProteinID:BAD33406.1ProteinID:BAF25414.1ProteinID:BAT08651.1ncoils:Coil
GO:GO:0000166GO:GO:0003674GO:GO:0005488GO:GO:0005515GO:GO:0005524GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0006457GO:GO:0006950GO:GO:0008150
GO:GO:0009987GO:GO:0051082InterPro:HATPase_CInterPro:HATPase_C_sfInterPro:HSP90_CInterPro:Heat_shock_protein_90_CS
InterPro:Hsp90_NInterPro:Hsp90_famInterPro:IPR036890InterPro:IPR037196HAMAP:MF_00505EnsemblPlantsGene:Os09g0482100
EnsemblPlants:Os09t0482100-01PFAM:PF00183PFAM:PF02518PIRSF:PIRSF002583PRINTS:PR00775ScanProsite:PS00298
PANTHER:PTHR11528PANTHER:PTHR11528:SF74UniProt:Q69QQ6InterPro:Ribosomal_S5_D2-typ_foldSMART:SM00387SUPFAM:SSF110942
SUPFAM:SSF54211SUPFAM:SSF55874UniParc:UPI00003FF38ARefSeq:XP_015611110.1SEG:seg:
Description
HEAT SHOCK PROTEIN 82BSimilar to Heat shock protein 82. (Os09t0482100-01)
Coordinates
chr9:-:18514776..18518316
Molecular Weight (calculated)
80204.2 Da
IEP (calculated)
4.691
GRAVY (calculated)
-0.603
Length
699 amino acids
Sequence
(BLAST)
001: MASETETFAF QAEINQLLSL IINTFYSNKE IFLRELISNS SDALDKIRFE SLTDKSKLDA QPELFIHIVP DKASNTLSII DSGVGMTKSD LVNNLGTIAR
101: SGTKEFMEAL AAGADVSMIG QFGVGFYSAY LVAERVVVTT KHNDDEQYVW ESQAGGSFTV TRDTSGEQLG RGTKITLYLK DDQLEYLEER RLKDLVKKHS
201: EFISYPISLW TEKTTEKEIS DDEDEEEKKD AEEGKVEDVD EEKEEKEKKK KKIKEVSHEW NVMNKQKPIW LRKPEEITKE EYAAFYKSLT NDWEEHLAVK
301: HFSVEGQLEF KAILFVPKRA PFDLFDTRKK QNNIKLYVRR VFIMDNCEEL IPEWLSFVKG IVDSEDLPLN ISREMLQQNK ILKVIRKNLV KKCVELFFEI
401: AENKEDYNKF YEAFSKNLKL GIHEDSTNRT KIAELLRYHS TKSGDELTSL KDYVTRMKEG QSEIYYITGE SKKAVENSPF LEKLKKKGYE VLYMVDAIDE
501: YAVGQLKEFE GKKLVSATKE GLKLDESEDE KKRQEELKEK FEGLCKVIKE VLGDKVEKVV VSDRVVDSPC CLVTGEYGWT ANMERIMKAQ ALRDSSMAGY
601: MSSKKTMEIN PENSIMDELR KRADADKNDK SVKDLVMLLF ETALLTSGFS LEDPNTFGTR IHRMLKLGLS IDEDESAEAD ADMPPLEDDA GESKMEEVD
Best Arabidopsis Sequence Match ( AT5G56000.1 )
(BLAST)
001: MADAETFAFQ AEINQLLSLI INTFYSNKEI FLRELISNSS DALDKIRFES LTDKSKLDGQ PELFIHIIPD KTNNTLTIID SGIGMTKADL VNNLGTIARS
101: GTKEFMEALA AGADVSMIGQ FGVGFYSAYL VADKVVVTTK HNDDEQYVWE SQAGGSFTVT RDTSGEALGR GTKMILYLKE DQMEYIEERR LKDLVKKHSE
201: FISYPISLWI EKTIEKEISD DEEEEEKKDE EGKVEEIDEE KEKEEKKKKK IKEVTHEWDL VNKQKPIWMR KPEEINKEEY AAFYKSLSND WEEHLAVKHF
301: SVEGQLEFKA ILFVPKRAPF DLFDTKKKPN NIKLYVRRVF IMDNCEDIIP DYLGFVKGIV DSEDLPLNIS RETLQQNKIL KVIRKNLVKK CLELFFEIAE
401: NKEDYNKFYE AFSKNLKLGI HEDSQNRTKI AELLRYHSTK SGDELTSLKD YVTRMKEGQN EIFYITGESK KAVENSPFLE KLKKKGYEVL YMVDAIDEYA
501: IGQLKEFEGK KLVSATKEGL KLEETDDEKK KKEELKEKFE GLCKVIKDVL GDKVEKVIVS DRVVDSPCCL VTGEYGWTAN MERIMKAQAL KDSNTGGYMS
601: SKKTMEINPE NSIMDELRKR AEADKNDKSV KDLVLLLFET ALLTSGFSLD EPNTFGSRIH RMLKLGLSIE EDDAVEADAE MPPLEDDADA EGSKMEEVD
Arabidopsis Description
HSP90-4Hsp81.4 [Source:UniProtKB/TrEMBL;Acc:A0A178UQ52]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.