Factsheet for TraesCS7A01G242200.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear, plastid, cytosol

Predictor Summary:

cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid, unclear
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

plastid: 22160430
unclear: 25769308

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G247300.3
TraesCS2B01G270300.2
TraesCS2D01G248400.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G56010.1	TraesCS2A01G247300.3	AT5G66570.1	16619024
AT5G56010.1	TraesCS2B01G270300.2	AT5G66570.1	16619024
AT5G56010.1	TraesCS2D01G248400.2	AT5G66570.1	16619024

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G149200.1	Wheat	golgi	99.57	99.57
TraesCS7D01G241100.1	Wheat	golgi	99.43	99.43
EES14299	Sorghum	cytosol	94.86	95.13
Zm00001d031332_P007	Maize	cytosol	91.43	94.81
Zm00001d052855_P001	Maize	plasma membrane	94.14	94.28
TraesCS5A01G260600.3	Wheat	nucleus	93.86	93.86
GSMUA_Achr10P...	Banana	cytosol, plasma membrane, unclear	82.43	92.32
GSMUA_Achr3P10970_001	Banana	cytosol, plasma membrane	77.57	92.03
GSMUA_Achr9P12680_001	Banana	cytosol	73.29	91.94
GSMUA_Achr3P04010_001	Banana	cytosol	73.86	91.83
GSMUA_Achr11P...	Banana	cytosol	75.0	90.99
Bra035593.1-P	Field mustard	cytosol	87.0	90.62
Bra035599.1-P	Field mustard	cytosol	72.86	90.59
Os08t0500700-01	Rice	extracellular, plasma membrane, vacuole	89.71	90.49
Solyc07g065840.2.1	Tomato	nucleus, plastid	90.14	90.27
Solyc12g015880.1.1	Tomato	nucleus	90.0	90.13
Bra028924.1-P	Field mustard	cytosol	89.86	89.99
Bra028952.1-P	Field mustard	cytosol	89.71	89.84
AT5G56010.1	Thale cress	cytosol	89.57	89.7
CDY11961	Canola	cytosol	46.43	89.29
Bra028948.1-P	Field mustard	cytosol	89.0	89.25
CDY11967	Canola	cytosol	73.43	89.24
AT5G56000.1	Thale cress	cytosol	88.57	88.7
CDY22598	Canola	cytosol	60.14	88.63
HORVU7Hr1G049370.2	Barley	cytosol, mitochondrion, plastid	82.71	88.53
AT5G56030.2	Thale cress	cytosol	89.71	86.26
TraesCS2A01G033700.1	Wheat	plastid	86.86	86.0
CDY06551	Canola	cytosol	69.86	85.34
CDY64982	Canola	cytosol	66.86	85.25
CDY20742	Canola	cytosol	67.0	85.12
CDY36807	Canola	cytosol	69.86	85.04
CDY36775	Canola	cytosol	17.86	85.03
CDY11921	Canola	cytosol	65.0	84.73
CDY36771	Canola	cytosol	17.71	84.35
CDY11962	Canola	cytosol	17.29	83.45
CDY36772	Canola	cytosol	42.71	82.37
CDY36776	Canola	cytosol	42.71	82.37
KRH50203	Soybean	cytosol	23.86	54.93
TraesCS1A01G154800.1	Wheat	endoplasmic reticulum	10.57	49.01
TraesCS1A01G131700.1	Wheat	endoplasmic reticulum	10.43	48.34
TraesCS3A01G155700.1	Wheat	endoplasmic reticulum, extracellular	10.43	48.34
TraesCS3A01G119400.1	Wheat	extracellular	10.29	47.68
TraesCS5A01G251000.1	Wheat	plastid	44.71	40.08
TraesCS5A01G101900.2	Wheat	mitochondrion	42.57	36.52

Protein Annotations

Gene3D:1.20.120.790	MapMan:19.1.6.1	Gene3D:3.30.230.80	Gene3D:3.30.565.10	Gene3D:3.30.70.2140	Gene3D:3.40.50.11260
ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524
GO:GO:0006457	GO:GO:0006950	GO:GO:0008150	GO:GO:0009987	GO:GO:0051082	InterPro:HATPase_C
InterPro:HATPase_C_sf	InterPro:HSP90_C	InterPro:Heat_shock_protein_90_CS	InterPro:Hsp90_N	InterPro:Hsp90_fam	InterPro:IPR036890
InterPro:IPR037196	HAMAP:MF_00505	PFAM:PF00183	PFAM:PF02518	PIRSF:PIRSF002583	PRINTS:PR00775
ScanProsite:PS00298	PANTHER:PTHR11528	PANTHER:PTHR11528:SF74	InterPro:Ribosomal_S5_D2-typ_fold	SMART:SM00387	SUPFAM:SSF110942
SUPFAM:SSF54211	SUPFAM:SSF55874	EnsemblPlantsGene:TraesCS7A01G242200	EnsemblPlants:TraesCS7A01G242200.1	TIGR:cd00075	SEG:seg

Description

No Description!

Coordinates

chr7A:-:217555694..217559742

Molecular Weight (calculated)

80456.6 Da

IEP (calculated)

4.693

GRAVY (calculated)

-0.612

Length

700 amino acids

Sequence
(BLAST)

001: MASETETFAF QAEINQLLSL IINTFYSNKE IFLRELISNA SDALDKIRFE SLTDKSKLDA QPELFIHIIP DKATNTLTLI DSGIGMTKSD LVNNLGTIAR
101: SGTKDFMEAL TAGADVSMIG QFGVGFYSAY LVAERVVVTS KHNDDEQYVW ESQAGGSFTV TRDTTGEPLG RGTKITLYLK DDQLEYLEER RLKDLVKKHS
201: EFISYPISLW TEKTTEKEIS DDEDEDEKKD TEEGKVEEID EEKEEKEKKK KKIKEVSHEW NLINKQKPIW MRKPEEITKD EYAAFYKSLT NDWEEHLAVK
301: HFSVEGQLEF KAVLFVPKRA PFDLFDTRKK LNNIKLYVRR VFIMDNCEEL IPEWLSFVKG IVDSEDLPLN ISRETLQQNK ILKVIRKNLV KKCIELFFEI
401: AENKEDYNKF YEAFSKNLKL GVHEDSTNRT KLAELLRYHS TKSGDELTSL KDYVTRMKEG QNDIYYITGE SKKAVENSPF LEKLKKKGYE VLYMVDAIDE
501: YSIGQLKEFE GKKLVSATKE GLKLDDSEEE KKRKEELKEK FEGLCKVIKE VLGDRVEKVI VSDRVVDSPC CLVTGEYGWT ANMERIMKAQ ALRDTSMGGY
601: MSSKKTMEIN PENAIMEELR KRADADKNDK SVKDLVMLLF ETSLLTSGFS LDDPNTFGTR IHRMLKLGLS IDEDEEAAEA DTDMPPLEED AGESKMEEVD

Best Arabidopsis Sequence Match ( AT5G56010.1 )
(BLAST)

001: MADAETFAFQ AEINQLLSLI INTFYSNKEI FLRELISNSS DALDKIRFES LTDKSKLDGQ PELFIHIIPD KTNNTLTIID SGIGMTKADL VNNLGTIARS
101: GTKEFMEALA AGADVSMIGQ FGVGFYSAYL VADKVVVTTK HNDDEQYVWE SQAGGSFTVT RDTSGEALGR GTKMVLYLKE DQMEYIEERR LKDLVKKHSE
201: FISYPISLWI EKTIEKEISD DEEEEEKKDE EGKVEEVDEE KEKEEKKKKK IKEVSHEWDL VNKQKPIWMR KPEEINKEEY AAFYKSLSND WEEHLAVKHF
301: SVEGQLEFKA ILFVPKRAPF DLFDTKKKPN NIKLYVRRVF IMDNCEDIIP EYLGFVKGIV DSEDLPLNIS RETLQQNKIL KVIRKNLVKK CLELFFEIAE
401: NKEDYNKFYE AFSKNLKLGI HEDSQNRTKI AELLRYHSTK SGDELTSLKD YVTRMKEGQN DIFYITGESK KAVENSPFLE KLKKKGIEVL YMVDAIDEYA
501: IGQLKEFEGK KLVSATKEGL KLDETEDEKK KKEELKEKFE GLCKVIKDVL GDKVEKVIVS DRVVDSPCCL VTGEYGWTAN MERIMKAQAL RDSSMGGYMS
601: SKKTMEINPE NSIMDELRKR ADADKNDKSV KDLVLLLFET ALLTSGFSLD EPNTFGSRIH RMLKLGLSID DDDVVEADAD MPPLEDDADA EGSKMEEVD

Arabidopsis Description

HSP90-3Heat shock protein 90-3 [Source:UniProtKB/Swiss-Prot;Acc:P51818]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.