Factsheet for TraesCS5A01G260600.3

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, secretory
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

extracellular: 19786127
golgi: 25769308
plasma membrane: 26897580
nucleus: 28628250

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 19786127 doi

FJ Kong, A Oyanagi, S Komatsu

National Institute of Crop Science, Tsukuba 305-8518, Japan.

msms PMID: 28628250 doi

T Bonnot, E Bancel, D Alvarez, M Davanture, J Boudet, M Pailloux, M Zivy, C Ravel, P Martre

LIMOS, CNRS, Université Blaise Pascal, Aubière, 63173, France., UMR GDEC, INRA, Université Clermont Auvergne, 5 chemin de Beaulieu, Clermont-Ferrand, 63039, France., UMR GQE, INRA, Université Paris-Sud, CNRS, AgroParisTech, Université Paris-Saclay, Gif-sur-Yvette, 91190, France.

msms PMID: 26897580 doi

Y Shen, J Du, L Yue, X Zhan

College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, Jiangsu Province, 210095, People's Republic of China., College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, Jiangsu Province, 210095, People's Republic of China. xhzhan@njau.edu.cn.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G247300.3
TraesCS2B01G270300.2
TraesCS2D01G248400.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G56010.1	TraesCS2A01G247300.3	AT5G66570.1	16619024
AT5G56010.1	TraesCS2B01G270300.2	AT5G66570.1	16619024
AT5G56010.1	TraesCS2D01G248400.2	AT5G66570.1	16619024

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G268000.1	Wheat	cytosol	99.86	99.86
TraesCS5B01G258900.2	Wheat	golgi	99.86	99.86
EES14299	Sorghum	cytosol	95.57	95.85
HORVU5Hr1G072420.2	Barley	plasma membrane	99.86	95.75
Zm00001d031332_P007	Maize	cytosol	92.0	95.41
Zm00001d052855_P001	Maize	plasma membrane	94.29	94.42
TraesCS7A01G242200.1	Wheat	cytosol, plastid, unclear	93.86	93.86
GSMUA_Achr3P10970_001	Banana	cytosol, plasma membrane	78.14	92.71
GSMUA_Achr10P...	Banana	cytosol, plasma membrane, unclear	82.71	92.64
Bra035599.1-P	Field mustard	cytosol	74.43	92.54
GSMUA_Achr9P12680_001	Banana	cytosol	73.71	92.47
Solyc07g065840.2.1	Tomato	nucleus, plastid	92.0	92.13
GSMUA_Achr3P04010_001	Banana	cytosol	74.0	92.01
AT5G56010.1	Thale cress	cytosol	91.71	91.85
Bra035593.1-P	Field mustard	cytosol	88.0	91.67
Bra028924.1-P	Field mustard	cytosol	91.43	91.56
Solyc12g015880.1.1	Tomato	nucleus	91.43	91.56
CDY11961	Canola	cytosol	47.57	91.48
Bra028952.1-P	Field mustard	cytosol	91.29	91.42
Bra028948.1-P	Field mustard	cytosol	91.14	91.4
GSMUA_Achr11P...	Banana	cytosol	75.29	91.33
CDY11967	Canola	cytosol	75.0	91.15
AT5G56000.1	Thale cress	cytosol	90.57	90.7
Os08t0500700-01	Rice	extracellular, plasma membrane, vacuole	89.71	90.49
CDY22598	Canola	cytosol	61.29	90.32
AT5G56030.2	Thale cress	cytosol	91.86	88.32
CDY36771	Canola	cytosol	18.43	87.76
CDY64982	Canola	cytosol	68.43	87.25
CDY36775	Canola	cytosol	18.29	87.07
CDY20742	Canola	cytosol	68.43	86.93
CDY06551	Canola	cytosol	71.14	86.91
CDY36807	Canola	cytosol	71.0	86.43
CDY11921	Canola	cytosol	65.71	85.66
CDY11962	Canola	cytosol	17.71	85.52
CDY36772	Canola	cytosol	44.0	84.85
CDY36776	Canola	cytosol	44.0	84.85
TraesCS2A01G033700.1	Wheat	plastid	85.14	84.3
KRH50203	Soybean	cytosol	23.57	54.28
TraesCS1A01G154800.1	Wheat	endoplasmic reticulum	10.86	50.33
TraesCS1A01G131700.1	Wheat	endoplasmic reticulum	10.86	50.33
TraesCS3A01G155700.1	Wheat	endoplasmic reticulum, extracellular	10.71	49.67
TraesCS3A01G119400.1	Wheat	extracellular	10.57	49.01
TraesCS5A01G251000.1	Wheat	plastid	44.57	39.95
TraesCS5A01G101900.2	Wheat	mitochondrion	42.43	36.4

Protein Annotations

Gene3D:1.20.120.790	MapMan:19.1.6.1	Gene3D:3.30.230.80	Gene3D:3.30.565.10	Gene3D:3.30.70.2140	Gene3D:3.40.50.11260
ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524
GO:GO:0006457	GO:GO:0006950	GO:GO:0008150	GO:GO:0009987	GO:GO:0051082	InterPro:HATPase_C
InterPro:HATPase_C_sf	InterPro:HSP90_C	InterPro:Heat_shock_protein_90_CS	InterPro:Hsp90_N	InterPro:Hsp90_fam	InterPro:IPR036890
InterPro:IPR037196	HAMAP:MF_00505	PFAM:PF00183	PFAM:PF02518	PIRSF:PIRSF002583	PRINTS:PR00775
ScanProsite:PS00298	PANTHER:PTHR11528	PANTHER:PTHR11528:SF74	InterPro:Ribosomal_S5_D2-typ_fold	SMART:SM00387	SUPFAM:SSF110942
SUPFAM:SSF54211	SUPFAM:SSF55874	EnsemblPlantsGene:TraesCS5A01G260600	EnsemblPlants:TraesCS5A01G260600.3	TIGR:cd00075	SEG:seg

Description

No Description!

Coordinates

chr5A:-:474541564..474544822

Molecular Weight (calculated)

80437.5 Da

IEP (calculated)

4.673

GRAVY (calculated)

-0.625

Length

700 amino acids

Sequence
(BLAST)

001: MATETETFAF QAEINQLLSL IINTFYSNKE IFLRELISNS SDALDKIRFE SLTDKSKLDA QPELFIHIIP DKATSTLTIV DSGIGMTKSD LVNNLGTIAR
101: SGTKEFMEAL AAGADVSMIG QFGVGFYSAY LVAERVVVTT KHNDDEQYVW ESQAGGSFTV TRDTSGEQLG RGTKMVLYLK DDQMEYLEER RIKDLVKKHS
201: EFISYPISLW TEKTTEKEIS DDEDEEEKKD TEEGKVEDVD EEKEEKEKKK KKIKEVSHEW NLVNKQKPIW MRKPEEINKE EYAAFYKSLT NDWEEHLAVK
301: HFSVEGQLEF KAVLFVPKRA PFDLFDNKKK ANNIKLYVRR VFIMDNCEEL IPEYLSFVKG IVDSEDLPLN ISRETLQQNK ILKVIRKNLV KKCIELFFEI
401: AENKEDYNKF YEAFSKNLKL GIHEDSQNRT KIAELLRYHS TKSGDELTSL KDYVTRMKEG QNEIYYITGE SKKAVENSPF LEKLKKKGYE VIYMVDAIDE
501: YAIGQLKEFE GKKLVSATKE GLKLDESEDE KKKQEELKEK FEGLCKVIKE VLGDKVEKVI VSDRVVDSPC CLVTGEYGWT ANMERIMKAQ ALRDSSMAGY
601: MSSKKTMEIN PENAIMDELR KRADADKNDK SVKDLVMLLF ETSLLTSGFS LEDPNTFGTR IHRMLKLGLS IDEDDEAPEN DTDMPPLEDD AGESKMEEVD

Best Arabidopsis Sequence Match ( AT5G56000.1 )
(BLAST)

001: MADAETFAFQ AEINQLLSLI INTFYSNKEI FLRELISNSS DALDKIRFES LTDKSKLDGQ PELFIHIIPD KTNNTLTIID SGIGMTKADL VNNLGTIARS
101: GTKEFMEALA AGADVSMIGQ FGVGFYSAYL VADKVVVTTK HNDDEQYVWE SQAGGSFTVT RDTSGEALGR GTKMILYLKE DQMEYIEERR LKDLVKKHSE
201: FISYPISLWI EKTIEKEISD DEEEEEKKDE EGKVEEIDEE KEKEEKKKKK IKEVTHEWDL VNKQKPIWMR KPEEINKEEY AAFYKSLSND WEEHLAVKHF
301: SVEGQLEFKA ILFVPKRAPF DLFDTKKKPN NIKLYVRRVF IMDNCEDIIP DYLGFVKGIV DSEDLPLNIS RETLQQNKIL KVIRKNLVKK CLELFFEIAE
401: NKEDYNKFYE AFSKNLKLGI HEDSQNRTKI AELLRYHSTK SGDELTSLKD YVTRMKEGQN EIFYITGESK KAVENSPFLE KLKKKGYEVL YMVDAIDEYA
501: IGQLKEFEGK KLVSATKEGL KLEETDDEKK KKEELKEKFE GLCKVIKDVL GDKVEKVIVS DRVVDSPCCL VTGEYGWTAN MERIMKAQAL KDSNTGGYMS
601: SKKTMEINPE NSIMDELRKR AEADKNDKSV KDLVLLLFET ALLTSGFSLD EPNTFGSRIH RMLKLGLSIE EDDAVEADAE MPPLEDDADA EGSKMEEVD

Arabidopsis Description

HSP90-4Hsp81.4 [Source:UniProtKB/TrEMBL;Acc:A0A178UQ52]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.