Factsheet for TraesCS3D01G493500.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular, cytosol

Predictor Summary:

cytosol 1
mitochondrion 1
plastid 1
extracellular 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, plastid
Any Predictor:	cytosol, extracellular, mitochondrion, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G097100.1
TraesCS2B01G112400.2
TraesCS2D01G096200.1
TraesCS4A01G335400.1
TraesCS5B01G549700.1
TraesCS5D01G536700.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G10710.1	TraesCS2A01G097100.1	AT1G09270.1	21798944
AT5G10710.1	TraesCS2B01G112400.2	AT1G09270.1	21798944
AT5G10710.1	TraesCS2D01G096200.1	AT1G09270.1	21798944
AT5G10710.1	TraesCS4A01G335400.1	AT4G24840.1	21798944
AT5G10710.1	TraesCS5B01G549700.1	AT4G24840.1	21798944
AT5G10710.1	TraesCS5D01G536700.1	AT4G24840.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU6Hr1G002620.4	Barley	cytosol	92.44	55.0
GSMUA_AchrUn_...	Banana	cytosol	65.55	46.43
TraesCS6D01G016500.1	Wheat	cytosol	94.12	33.04
TraesCS6A01G013400.1	Wheat	cytosol	93.28	32.74
TraesCS6B01G020300.2	Wheat	nucleus	92.44	32.35
HORVU6Hr1G002520.13	Barley	cytosol, nucleus	92.44	31.98
KXG38548	Sorghum	cytosol	77.31	29.02
PGSC0003DMT400004637	Potato	cytosol	60.5	22.36
VIT_04s0008g02440.t01	Wine grape	nucleus	59.66	21.78
Solyc08g077520.2.1	Tomato	cytosol, nucleus	57.98	21.43
KRH61930	Soybean	nucleus	56.3	18.82
KRH52593	Soybean	nucleus	55.46	18.75
CDX78396	Canola	endoplasmic reticulum, golgi	47.9	16.57
CDX70366	Canola	endoplasmic reticulum, extracellular, golgi	47.9	16.01
Bra006073.1-P	Field mustard	endoplasmic reticulum	47.9	15.66
AT5G10710.1	Thale cress	cytosol	40.34	15.38
Os04t0284100-01	Rice	cytosol	0.0	0.0
GSMUA_AchrUn_...	Banana	cytosol	0.0	0.0
Zm00001d032978_P001	Maize	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:TraesCS3D01G493500.1

EnsemblPlantsGene:TraesCS3D01G493500

PANTHER:PTHR14582

MapMan:35.2

Description

No Description!

Coordinates

chr3D:-:586748371..586749018

Molecular Weight (calculated)

13625.5 Da

IEP (calculated)

6.609

GRAVY (calculated)

-0.052

Length

119 amino acids

Sequence
(BLAST)

001: MFKVRLIKEL YGNQIGELSY SLPYTLIEFT LEDFECKVTV SIRYSDLILT LPSQARVLAW PLRSAKRISA ADCRAQPVPS RLSYADNALK TLSLPEAYAE
101: IVLELPRALK QTFYYQESD

Best Arabidopsis Sequence Match ( AT5G10710.3 )
(BLAST)

001: MGEMIVSMDQ DIRLDTTRAR LSNLLKRHRE LSDRLTRDSD KTMLDRLNKE FEAARRSQSQ EVFQALVHME ADRKADNGNA GFSLVCHPEE RITYRVGNKV
101: ICCLDGSRIG IQFETSTAGE TYEVYHCVLE SKSFLEKMIV LEHTIPFFLP LSDLENDLLF SNAKKFIDNV GDLLQAYVDR KEQVRLIKEL FGHQISEIYH
201: SLPYHMIEFS MDDCDCKFVV SLRYGDLLCE LPTKVRILVW PMHHLSKKQC TSPGSPAIPV RLPFAEDAFR IQSLPEAYAE IMPNMPNEIR QLFQTSPS

Arabidopsis Description

Centromere protein O [Source:UniProtKB/TrEMBL;Acc:Q8GUP4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.