Factsheet for Zm00001d032978_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d012851_P001
Zm00001d022536_P008
Zm00001d034842_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G10710.1	Zm00001d022536_P008	AT1G09270.1	21798944
AT5G10710.1	Zm00001d012851_P001	AT4G24840.1	21798944
AT5G10710.1	Zm00001d034842_P001	AT4G24840.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os04t0284100-01	Rice	cytosol	43.87	62.96
GSMUA_AchrUn_...	Banana	cytosol	52.26	53.64
KXG38548	Sorghum	cytosol	78.71	38.49
TraesCS6A01G013400.1	Wheat	cytosol	70.32	32.15
TraesCS6B01G020300.2	Wheat	nucleus	70.32	32.06
HORVU6Hr1G002520.13	Barley	cytosol, nucleus	70.97	31.98
TraesCS6D01G016500.1	Wheat	cytosol	69.03	31.56
VIT_04s0008g02440.t01	Wine grape	nucleus	54.84	26.07
PGSC0003DMT400004637	Potato	cytosol	52.26	25.16
Solyc08g077520.2.1	Tomato	cytosol, nucleus	51.61	24.84
KRH61930	Soybean	nucleus	54.84	23.88
AT5G10710.1	Thale cress	cytosol	47.74	23.72
KRH52593	Soybean	nucleus	53.55	23.58
CDX78396	Canola	endoplasmic reticulum, golgi	48.39	21.8
CDX70366	Canola	endoplasmic reticulum, extracellular, golgi	47.1	20.51
Bra006073.1-P	Field mustard	endoplasmic reticulum	47.1	20.05
HORVU6Hr1G002620.4	Barley	cytosol	11.61	9.0
TraesCS3D01G493500.1	Wheat	cytosol, extracellular, plastid	0.0	0.0
GSMUA_AchrUn_...	Banana	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:Zm00001d032978_P001	EnsemblPlants:Zm00001d032978_T001	EnsemblPlantsGene:Zm00001d032978	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
ncoils:Coil	PANTHER:PTHR14582	ProteinID:ONM06494.1	TMHMM:TMhelix	UniParc:UPI0008443963	UniProt:A0A1D6KVD6
MapMan:35.2	:	:	:	:	:

Description

No Description!

Coordinates

chr1:+:245437954..245453257

Molecular Weight (calculated)

18022.4 Da

IEP (calculated)

5.338

GRAVY (calculated)

-0.428

Length

155 amino acids

Sequence
(BLAST)

001: MSFYLPQTYA RDDDAKLETT RARLSNILKR HEDLKERLSR DSDKLIFERL QKEFEAARAA QTEEISINDD EWNDGLLATI REKVHMEADR KAMSNQVNVP
101: ADLSFQSRTT YRIRNKVACA PQIIAFFIAL YLVIYCLDGA RIGIQYETFF AGDYL

Best Arabidopsis Sequence Match ( AT5G10710.1 )
(BLAST)

001: MGEMIVSMDQ DIRLDTTRAR LSNLLKRHRE LSDRLTRDSD KTMLDRLNKE FEAARRSQSQ EVFLDGEEWN DGLLATLRER VHMEADRKAD NGNAGFSLVC
101: HPEERITYRV GNKVICCLDG SRIGIQFETS TAGETYEVYH CVLESKSFLE KMIVLEHTIP FFLPLSDLEN DLLFSNAKKF IDNVGDLLQA YVDRKEQVRL
201: IKELFGHQIS EIYHSLPYHM IEFSMDDCDC KFVVSLRYGD LLCELPTKVR ILVWPMHHLS KKQCTSPGSP AIPVRLPFAE DAFRIQSLPE AYAEIMPNMP
301: NEIRQLFQTS PS

Arabidopsis Description

Centromere protein O [Source:UniProtKB/TrEMBL;Acc:Q8GUP4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.