Factsheet for Bra006073.1-P

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 2
extracellular 4
endoplasmic reticulum 6
vacuole 4
plasma membrane 5
golgi 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	endoplasmic reticulum

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra006453.1-P
Bra013840.1-P
Bra018570.1-P
Bra019205.1-P
Bra030765.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G10710.1	Bra018570.1-P	AT1G09270.1	21798944
AT5G10710.1	Bra030765.1-P	AT1G09270.1	21798944
AT5G10710.1	Bra006453.1-P	AT4G24840.1	21798944
AT5G10710.1	Bra013840.1-P	AT4G24840.1	21798944
AT5G10710.1	Bra019205.1-P	AT4G24840.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78396	Canola	endoplasmic reticulum, golgi	87.91	93.02
AT5G10710.1	Thale cress	cytosol	65.66	76.6
VIT_04s0008g02440.t01	Wine grape	nucleus	54.95	61.35
PGSC0003DMT400004637	Potato	cytosol	53.85	60.87
Solyc08g077520.2.1	Tomato	cytosol, nucleus	53.02	59.94
HORVU6Hr1G002620.4	Barley	cytosol	32.14	58.5
GSMUA_AchrUn_...	Banana	cytosol	26.37	57.14
KRH61930	Soybean	nucleus	54.95	56.18
KRH52593	Soybean	nucleus	54.12	55.97
KXG38548	Sorghum	cytosol	48.08	55.2
TraesCS6A01G013400.1	Wheat	cytosol	47.8	51.33
TraesCS6B01G020300.2	Wheat	nucleus	47.8	51.18
HORVU6Hr1G002520.13	Barley	cytosol, nucleus	48.08	50.87
TraesCS6D01G016500.1	Wheat	cytosol	46.98	50.44
TraesCS3D01G493500.1	Wheat	cytosol, extracellular, plastid	15.66	47.9
Zm00001d032978_P001	Maize	cytosol	20.05	47.1
GSMUA_AchrUn_...	Banana	cytosol	18.13	43.71
Os04t0284100-01	Rice	cytosol	12.36	41.67

Protein Annotations

EnsemblPlants:Bra006073.1	EnsemblPlants:Bra006073.1-P	EnsemblPlantsGene:Bra006073	GO:GO:0000776	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0034508	InterPro:CENP-O
PANTHER:PTHR14582	PFAM:PF09496	UniParc:UPI000253F89D	UniProt:M4CPD5	MapMan:35.2	:

Description

AT5G10710 (E=5e-136) | protein binding

Coordinates

chrA03:+:1869659..1872168

Molecular Weight (calculated)

41904.7 Da

IEP (calculated)

5.653

GRAVY (calculated)

-0.137

Length

364 amino acids

Sequence
(BLAST)

001: MKREGSFHLC IGVGWFVIAD ELLFVKESPF QILEYCVELG LVIVGLFIRK TGDFRCDIVS LDDDIPLDST RARFTNLLKR HQQLTDRLTR DSDKMIFDRL
101: SKEFEAARAS QSQEVCLDGE EWNDGLLATL RERVHMEADK KDSGNSGFAP VSHLEERIAY RVGNKVIYCL EGARIGIQYG TSFAGETYEI YHCVLESKSF
201: LEKMNVLEHT IPFFLPLRDL ENVLLSSNAK KFIDNVGDLL HAYVERREQV RLIKELYGNQ IRELYHSLPY HMIEFAIDDC DCKVVVSLRY GNLMCELPTK
301: VRVLAWPMHQ LKRQCTSPRL SKLASQAIPV RLSFAEDALR IQSLPEAYAE IVVNMPQEIE QIFL

Best Arabidopsis Sequence Match ( AT5G10710.1 )
(BLAST)

001: MGEMIVSMDQ DIRLDTTRAR LSNLLKRHRE LSDRLTRDSD KTMLDRLNKE FEAARRSQSQ EVFLDGEEWN DGLLATLRER VHMEADRKAD NGNAGFSLVC
101: HPEERITYRV GNKVICCLDG SRIGIQFETS TAGETYEVYH CVLESKSFLE KMIVLEHTIP FFLPLSDLEN DLLFSNAKKF IDNVGDLLQA YVDRKEQVRL
201: IKELFGHQIS EIYHSLPYHM IEFSMDDCDC KFVVSLRYGD LLCELPTKVR ILVWPMHHLS KKQCTSPGSP AIPVRLPFAE DAFRIQSLPE AYAEIMPNMP
301: NEIRQLFQTS PS

Arabidopsis Description

Centromere protein O [Source:UniProtKB/TrEMBL;Acc:Q8GUP4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.